OVERVIEW OF KINGDOM FUNGI:

Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha)

Meredith Blackwell, David S. Hibbett, John W. Taylor & Joseph W. Spatafora
Published Online: April 18, 2007
Mycologia 2006 98: 829-837. doi: 10.3852/mycologia.98.6.829 [Abstract] [Full Text] [PDF]  

Dating divergences in the Fungal Tree of Life: review and new analyses

John W. Taylor & Mary L. Berbee
Published Online: April 18, 2007
Mycologia 2006 98: 838-849. doi: 10.3852/mycologia.98.6.838 [Abstract] [Full Text] [PDF]  

Assembling the Fungal Tree of Life: constructing the Structural and Biochemical Database

G.J. Celio, M. Padamsee, B.T.M. Dentinger, R. Bauer & D.J. McLaughlin
Published Online: April 18, 2007
Mycologia 2006 98: 850-859. doi: 10.3852/mycologia.98.6.850 [Abstract] [Full Text] [PDF] Supplementary Material  

EARLY DIVERGING LINEAGES:

A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)

Timothy Y. James, Peter M. Letcher, Joyce E. Longcore, Sharon E. Mozley-Standridge, David Porter, Martha J. Powell, Gareth W. Griffith & Rytas Vilgalys
Published Online: April 18, 2007
Mycologia 2006 98: 860-871. doi: 10.3852/mycologia.98.6.860 [Abstract] [Full Text] [PDF] Supplementary material  

Phylogeny of the Zygomycota based on nuclear ribosomal sequence data

Merlin M. White, Timothy Y. James, Kerry O’Donnell, Matías J. Cafaro, Yuuhiko Tanabe & Junta Sugiyama
Published Online: April 18, 2007
Mycologia 2006 98: 872-884. doi: 10.3852/mycologia.98.6.872 [Abstract] [Full Text] [PDF] Supplementary Table I  

Phylogeny of the Glomeromycota (arbuscular mycorrhizal fungi): recent developments and new gene markers

Dirk Redecker & Philipp Raab
Published Online: April 18, 2007
Mycologia 2006 98: 885-895. doi: 10.3852/mycologia.98.6.885 [Abstract] [Full Text] [PDF] Supplementary material  

BASIDIOMYCOTA:

An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences

M. Catherine Aime, P. Brandon Matheny, Daniel A. Henk, Elizabeth M. Frieders, R. Henrik Nilsson, Meike Piepenbring, David J. McLaughlin, Les J. Szabo, Dominik Begerow, José Paulo Sampaio, Robert Bauer, Michael Weiß, Franz Oberwinkler & David Hibbett
Published Online: April 18, 2007
Mycologia 2006 98: 896-905. doi: 10.3852/mycologia.98.6.896 [Abstract] [Full Text] [PDF] Supplementary material  

A phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data

Dominik Begerow, Matthias Stoll & Robert Bauer
Published Online: April 18, 2007
Mycologia 2006 98: 906-916. doi: 10.3852/mycologia.98.6.906 [Abstract] [Full Text] [PDF] Supplementary material  

A phylogenetic overview of the Agaricomycotina

David S. Hibbett
Published Online: April 18, 2007
Mycologia 2006 98: 917-925. doi: 10.3852/mycologia.98.6.917 [Abstract] [Full Text] [PDF] Supplementary Tables I & II  

Hymenochaetales: a molecular phylogeny for the hymenochaetoid clade

Karl-Henrik Larsson, Erast Parmasto, Michael Fischer, Ewald Langer, Karen K. Nakasone & Scott A. Redhead
Published Online: April 18, 2007
Mycologia 2006 98: 926-936. doi: 10.3852/mycologia.98.6.926 [Abstract] [Full Text] [PDF] Supplementary material  

The cantharelloid clade: dealing with incongruent gene trees and phylogenetic reconstruction methods

Jean-Marc Moncalvo, R. Henrik Nilsson, Brenda Koster, Susie M. Dunham, Torsten Bernauer, P. Brandon Matheny, Teresita M. Porter, Simona Margaritescu, Michael Weiß, Sigisfredo Garnica, Eric Danell, Gitta Langer, Ewald Langer, Ellen Larsson, Karl-Henrik Larsson & Rytas Vilgalys
Published Online: April 18, 2007
Mycologia 2006 98: 937-948. doi: 10.3852/mycologia.98.6.937 [Abstract] [Full Text] [PDF] Supplementary material  

Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders

Kentaro Hosaka, Scott T. Bates, Ross E. Beever, Michael A. Castellano, Wesley Colgan, III, Laura S. Domínguez, Eduardo R. Nouhra, József Geml, Admir J. Giachini, S. Ray Kenney, Nicholas B. Simpson, Joseph W. Spatafora & James M. Trappe
Published Online: April 18, 2007
Mycologia 2006 98: 949-959. doi: 10.3852/mycologia.98.6.949 [Abstract] [Full Text] [PDF] Supplementary material  

Perspectives in the new Russulales

Steven L. Miller, Ellen Larsson, Karl-Henrik Larsson, Annemieke Verbeken & Jorinde Nuytinck
Published Online: April 18, 2007
Mycologia 2006 98: 960-970. doi: 10.3852/mycologia.98.6.960 [Abstract] [Full Text] [PDF] Supplementary material  

Molecular systematics and biological diversification of Boletales

Manfred Binder & David S. Hibbett
Published Online: April 18, 2007
Mycologia 2006 98: 971-981. doi: 10.3852/mycologia.98.6.971 [Abstract] [Full Text] [PDF] Supplementary material  

Major clades of Agaricales: a multilocus phylogenetic overview

P. Brandon Matheny, Judd M. Curtis, Valérie Hofstetter, M. Catherine Aime, Jean-Marc Moncalvo, Zai-Wei Ge, Zhu-Liang Yang, Jason C. Slot, Joseph F. Ammirati, Timothy J. Baroni, Neale L. Bougher, Karen W. Hughes, D. Jean Lodge, Richard W. Kerrigan, Michelle T. Seidl, Duur K. Aanen, Matthew DeNitis, Graciela M. Daniele, Dennis E. Desjardin, Bradley R. Kropp, Lorelei L. Norvell, Andrew Parker, Else C. Vellinga, Rytas Vilgalys & David S. Hibbett
Published Online: April 18, 2007
Mycologia 2006 98: 982-995. doi: 10.3852/mycologia.98.6.982 [Abstract] [Full Text] [PDF] Supplementary material  

ASCOMYCOTA:

Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas

Junta Sugiyama, Kentaro Hosaka & Sung-Oui Suh
Published Online: April 18, 2007
Mycologia 2006 98: 996-1005. doi: 10.3852/mycologia.98.6.996 [Abstract] [Full Text] [PDF] Supplementary Table III  

Phylogenetics of Saccharomycetales, the ascomycete yeasts

Sung-Oui Suh, Meredith Blackwell, Cletus P. Kurtzman & Marc-André Lachance
Published Online: April 18, 2007
Mycologia 2006 98: 1006-1017. doi: 10.3852/mycologia.98.6.1006 [Abstract] [Full Text] [PDF] Supplementary Table I  

A five-gene phylogeny of Pezizomycotina

Joseph W. Spatafora, Gi-Ho Sung, Desiree Johnson, Cedar Hesse, Benjamin O’Rourke, Maryna Serdani, Robert Spotts, François Lutzoni, Valérie Hofstetter, Jolanta Miadlikowska, Valérie Reeb, Cécile Gueidan, Emily Fraker, Thorsten Lumbsch, Robert Lücking, Imke Schmitt, Kentaro Hosaka, André Aptroot, Claude Roux, Andrew N. Miller, David M. Geiser, Josef Hafellner, Geir Hestmark, A. Elizabeth Arnold, Burkhard Büdel, Alexandra Rauhut, David Hewitt, Wendy A. Untereiner, Mariette S. Cole, Christoph Scheidegger, Matthias Schultz, Harrie Sipman & Conrad L. Schoch
Published Online: April 18, 2007
Mycologia 2006 98: 1018-1028. doi: 10.3852/mycologia.98.6.1018 [Abstract] [Full Text] [PDF] Supplementary Table I  

Systematics of the Pezizomycetes—the operculate discomycetes

K. Hansen & D.H. Pfister
Published Online: April 18, 2007
Mycologia 2006 98: 1029-1040. doi: 10.3852/mycologia.98.6.1029 [Abstract] [Full Text] [PDF] Supplementary Table I  

A multigene phylogeny of the Dothideomycetes using four nuclear loci

Conrad L. Schoch, Robert A. Shoemaker, Keith A. Seifert, Sarah Hambleton, Joseph W. Spatafora & Pedro W. Crous
Published Online: April 18, 2007
Mycologia 2006 98: 1041-1052. doi: 10.3852/mycologia.98.6.1041 [Abstract] [Full Text] [PDF] Supplementary Table I  

Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae

David M. Geiser, Cécile Gueidan, Jolanta Miadlikowska, François Lutzoni, Frank Kauff, Valérie Hofstetter, Emily Fraker, Conrad L. Schoch, Leif Tibell, Wendy A. Untereiner & André Aptroot
Published Online: April 18, 2007
Mycologia 2006 98: 1053-1064. doi: 10.3852/mycologia.98.6.1053 [Abstract] [Full Text] [PDF] Supplementary Table I  

Toward a phylogenetic classification of the Leotiomycetes based on rDNA data

Zheng Wang, Peter R. Johnston, Susumu Takamatsu, Joseph W. Spatafora & David S. Hibbett
Published Online: April 18, 2007
Mycologia 2006 98: 1065-1075. doi: 10.3852/mycologia.98.6.1065 [Abstract] [Full Text] [PDF] Supplementary Table I  

An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny

Ning Zhang, Lisa A. Castlebury, Andrew N. Miller, Sabine M. Huhndorf, Conrad L. Schoch, Keith A. Seifert, Amy Y. Rossman, Jack D. Rogers, Jan Kohlmeyer, Brigitte Volkmann-Kohlmeyer & Gi-Ho Sung
Published Online: April 18, 2007
Mycologia 2006 98: 1076-1087. doi: 10.3852/mycologia.98.6.1076 [Abstract] [Full Text] [PDF] Supplementary Table I  

New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes

Jolanta Miadlikowska, Frank Kauff, Valérie Hofstetter, Emily Fraker, Martin Grube, Josef Hafellner, Valérie Reeb, Brendan P. Hodkinson, Martin Kukwa, Robert Lücking, Geir Hestmark, Monica Garcia Otalora, Alexandra Rauhut, Burkhard Büdel, Christoph Scheidegger, Einar Timdal, Soili Stenroos, Irwin Brodo, Gary B. Perlmutter, Damien Ertz, Paul Diederich, James C. Lendemer, Philip May, Conrad L. Schoch, A. Elizabeth Arnold, Cécile Gueidan, Erin Tripp, Rebecca Yahr, Connie Robertson & François Lutzoni
Published Online: April 18, 2007
Mycologia 2006 98: 1088-1103. doi: 10.3852/mycologia.98.6.1088 [Abstract] [Full Text] [PDF] Supplementary material  

WITH GRATITUDE:

WITH GRATITUDE

Published Online: April 18, 2007
Mycologia 2006 98: 1104-1105. doi: 10.3852/mycologia.98.6.1104 [Full Text] [PDF]  

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