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National Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland 20894, and Insect Biocontrol Laboratory, USDA, ARS, BARC-West, Beltsville, Maryland 20705-2350
Stephen A. Rehner
Insect Biocontrol Laboratory, USDA, ARS, BARC-West, Beltsville, Maryland 20705-2350
Richard A. Humber
USDA/ARS Plant, Soil and Nutritional Laboratory, Ithaca, New York 14853
| ABSTRACT |
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The anamorph genus Metarhizium is composed of arthropod pathogens, several with broad geographic and host ranges. Members of the genus, including M. anisopliae var. frigidum nomen nudum and Metarhizium flavoviride, have been used as biological insecticides. In a recent revision of the genus the variety M. anisopliae var. frigidum was suggested to be a synonym of M. flavoviride based largely on ITS sequence phylogenetic analysis. In this study we conducted morphological evaluations and multigene phylogenetic analyses with EF-1
, RPB1 and RPB2 for strains of M. flavoviride and M. anisopliae var. frigidum. Included in these evaluations were the ex-type of M. flavoviride var. flavoviride and what likely would be considered the ex-type of the invalidly published taxon M. anisopliae var. frigidum. Based on morphological and molecular evidence we conclude that M. anisopliae var. frigidum is distinct from M. flavoviride and the taxon M. frigidum sp. nov. is described.
Key words: biocontrol, Clavicipitaceae, Cordyceps, cryptic species, entomopathogen
| INTRODUCTION |
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In her 1976 revision of the genus Tulloch recognized only two species, M. anisopliae and M. flavoviride W. Gams & Rozsypal, along with a single variety M. anisopliae var. majus (J.R. Johnst.) M.C. Tulloch (as var. major). Since that time additional species and varieties have been identified and links have been made to the teleomorph genus Cordyceps (Fr.) Link of the hypocrealean family Clavicipitaceae (Liang et al 1991
, Liu et al 2001
). In the most recent revision of the genus Driver et al (2000)
recognized three species and six varieties. However they were unable to include four previously described species of Metarhizium in their study because ...none is [sic] known to be deposited in culture collections (Driver et al 2000
p 136). These unrepresented taxa are M. pingshaense X.T. Chen & H.L. Guo, M. cylindrosporae X.T. Chen & H.L. Guo (= Nomuraea cylindrosporae [X.T. Chen & H.L. Guo] Tzean, L.S. Hsieh, J.L. Chen & W.J. Wu), M. guizhouense X.T. Chen & H.L. Guo, and M. taii Z.Q. Liang & A.Y. Liu (anamorph of Cordyceps taii Z.Q. Liang & A.Y. Liu). Driver et al (2000)
did not comment on the positions and validity of these taxa. In addition they suggested that M. anisopliae var. frigidum was actually a synonym of M. flavoviride. Their analyses were based on internal transcribed spacer (ITS) regions 1, 5.8S, 2 and the D3 region of 28S (LSU) of the nuclear ribosomal DNA (rDNA).
Yip et al (1992)
investigated conidial measurements, growth response to temperature regimes, and pathogenicity on scarab larvae of 204 isolates identified as Metarhizium anisopliae var. anisopliae. They found that all of these isolates shared similar conidial morphology but some showed the ability to germinate at colder temperatures (i.e. 5 C). Using these data and adding carbohydrate use patterns Rath et al (1995)
also identified particular strains that were cold-active and referred to them as Metarhizium anisopliae var. frigidum.
When including a broader sample of Metarhizium taxa, Driver et al (2000)
determined that Metarhizium anisopliae var. frigidum was more closely related to the Metarhizium flavoviride clade than M. anisopliae. The D3 region of the LSU and ITS rDNA regions used in their phylogenetic study did not support a clear distinction between Metarhizium anisopliae var. frigidum and Metarhizium flavoviride, so they were recognized as synonyms. However Driver et al did not address the morphological disparities between the conidial measurements of M. anisopliae var. frigidum (Yip et al 1992
, Rath et al 1995
) and M. flavoviride, with its larger conidia (Gams and Rozsypal 1973
; see TABLE I
).
|
) protein coding gene and partial sequences from two subunits of RNA polymerase II (RPB1 and RPB2). Due to the generosity of Richard Milner of the Commonwealth Scientific and Industrial Research Organization (CSIRO, Canberra, Australia), we have studied many of the isolates used in the Driver et al (2000)| MATERIALS AND METHODS |
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Morphological evaluations.
Isolates were grown on quarter strength SDAY (SDAY/4) media (SDAY: 10 g bactopeptone, 40 g dextrose, 10 g yeast extract, 2% agar; Goettel and Inglis 1997
) 514 d in the dark. Morphological observations and photographs of the cultured isolates were made with a Nikon Eclipse E600 compound microscope and ACT-1 version 2.12 image capturing software (Nikon Corp.). Minimum and maximum values in TABLE I
are from a minimum of 20 measurements.
DNA extraction. Isolates were grown in SDY/4 broth 57 d on an orbital shaker set at 125 rpm and 25 C. The tissue was removed from the broth, rinsed twice with sterile water, filter dried, frozen at 80 C and lyophilized. Approximately 50 mg of lyophilized mycelium was ground into powder with the FastPrep tissue homogenizer (MP Biomedicals, Irvine California). The pulverized tissue was lysed with 900 µL of lysis buffer (2 M NaCl, 0.4% w/v deoxycholic acid, 1.0% w/v polyoxyethylene ether) and incubated 10 min at 55 C. Cellular byproducts were extracted with 750 µL of chloroform: isoamyl alcohol (24:1) and centrifuged to separate the aqueous and particulate phases. The 700 µL of the cleared solution containing DNA was removed, placed in a clean tube and mixed with an equal portions of 6 M guanidinium isothiocyanate. DNA was bound to 40 µL of equal volumes of diatomaceous earth and flint glass powder. The bound DNA was resuspended twice in 75% ethanol, dried and eluted in sterile distilled water incubated 5 min at 55 C.
PCR amplification and nucleotide sequencing.
Partial sequences of three nuclear protein coding genes were amplified and sequenced for this study. They include the 5' intron-rich region of the translation elongation factor 1-alpha (EF-1
intron region), a large exon region of the translation elongation factor 1-alpha (EF-1
exon), poly-merase II largest subunit (RPB1) and two regions of the RNA polymerase second largest subunit (RPB2a and RPB2b). The 5' EF-1
intron region was amplified and sequenced for all isolates while the other regions were amplified and sequenced for a subset (i.e. 15 isolates). The primers used for amplification and sequencing were 5' EF-1
intron region: EF1T (5'-ATGGGTAAGGARGACAAGAC) and EF2T (5'-GGAAGTACCAGTGATCATGTT) (Rehner and Buckley 2005
); EF-1
exon: 983F (5'-GCYCCYGGHCAYCGT-GAYTTYAT), and 2218R (5'-ATGACACCRACRGCRACRG-TYTG) (Rehner and Buckley 2005
); RPB1: RPB1Af (5'-GARTGYCCDGGDCAYTTYGG) and RPB1C (5'-CCNGCDA-TNTCRTTRTCCATRTA) (Stiller and Hall 1997
); RPB2a: fRPB2-5F (5'-GAYGAYMGWGATCAYTTYGG) and RPB2-7cR (5'-CCCATRGCTTGYTTRCCCAT) (Liu et al 1999
); RPB2b: fRPB2-7cf (5'-ATGGGYAARCAAGCYATGGG) (Lui et al 1999) and RPB2-3053R (5'-TGRATYTTRTCRTCSACCAT-RTG) (Reeb et al 2004
). The amplification primers and three additional primers for the EF-1
exon, 1567R (5'-ACHGTRCCRATACCACCRAT), 1577F (5'-CARGAYGTBTA-CAAGATYGGTGG), and 2212R (5'-CCRAACRGCRACRG-TYYGTCTCAT) (Rehner and Buckley 2005
), were used for sequencing. Procedures for amplification and sequencing were the same as used by (Rehner and Buckley 2005
).
Sequence alignment and phylogenetic analyses.
Sequences were assembled and edited with Sequencher 4.1 (Gene Codes Corp., Ann Arbor, Michigan). Alignments were made with Clustal X (Thompson et al 1997
) using the default settings. Adjustments to the alignment and the elimination of ambiguous regions were necessary only for the EF-1
intron region.
Maximum parsimony (MP) and Bayesian inference (BI) methods were used to develop phylogenetic hypotheses. MP-based analyses were done with PAUP* v.4.0b10 (Swofford 2002
) using heuristic searches of 500 random-addition replicates with TBR branch swapping and equal character weighting. Heuristic MP bootstrap analyses (Felsenstein 1985
) with TBR branch swapping included 1000 pseudoreplicates and 10 random addition replicates were done to identify bootstrap support values (BP).
Bayesian analyses were performed with MrBayes v.3.1 (Huelsenbeck 2000
, Ronquist and Huelsenbeck 2003
) to determine posterior probabilities (PP). MrBayes was run with 4 mcmc chains (3 cold, 1 heated) for 2 000 000 generations, sampling every 100 generations (including the first generation) for a total of 20 001 trees. The first 20% of the resulting trees were discarded to let the log-likelihood scores reach stability (i.e. burn in). MrBayes was run twice in simultaneous, independent analyses starting from different random trees (default setting), providing a total of 36 000 trees. The trees were imported into PAUP and a 50% consensus tree was computed with the support values representing the PP values. Clades with 70% or greater BP and 95% PP or greater support were considered significantly supported by the data (Mason-Gamer and Kellog 1996, Reeb et al 2004
).
EF-1
intron region, EF-1
exon, RPB1, and RPB2 were first analyzed individually. Examinations for topological incongruence were made between the EF-1
, RPB1 and RPB2 regions by a reciprocal 70% BP and a 95% PP (Reeb et al 2004
) to determine if the datasets could be combined. Due to the rapidly evolving nature of the 5' EF-1
intron region the most distal lineage from the Metarhizium flavoviride clade (i.e. M. anisopliae, Driver et al 2000
) was not included in the combined gene analysis.
| RESULTS |
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introns (26 parsimony-informative characters), 990 for EF-1
(59 parsimony-informative characters), 918 for RPB1 (78 parsimony-informative characters) and 1799 for RPB2 (207 parsimony-informative characters).
In the individual analyses of the EF-1
, RPB1, and RPB2 regions (single-gene trees not shown), no conflict was found in the terminal groups (i.e. phylogenetic species). The only discrepancy was in the placement of the Metarhizium anisopliae var. frigidum clade in relation to other members of the M. flavoviride complex. In each analysis M. anisopliae was used as outgroup and M. flavoviride var. pemphigi and M. flavoviride var. minus formed sister groups. RPB1 and EF-1
placed M. anisopliae var. frigidum as sister of M. flavoviride var. flavoviride. However RPB2 placed this taxon as ancestral to M. flavoviride var. pemphigi and M. flavoviride var. minus and M. flavoviride var. flavoviride as sister of these three taxa. Because there was no conflict in the terminal groups the three genes were combined (multigene dataset).
MP analysis of the multigene dataset recovered a single most parsimonious tree of 438 steps (FIG. 9
). Each taxon formed a significantly supported terminal group that received 100% support in both PP and BP. Again the only conflict found was in the placement of Metarhizium anisopliae var. frigidum in relation to the varieties of M. flavoviride. Bayesian analysis placed M. anisopliae var. frigidum as sister of M. flavoviride with 53% PP. BP provided a value of 53 in support of M. anisopliae var. frigidum placement as ancestral to M. flavoviride var. pemphigi and M. flavoviride var. minus. The M. flavoviride complex was significantly supported as a monophyletic grouping (100% PP and BP; see FIG. 9
).
In the analysis limited to just the 5' EF-1
intron region that included a more extensive sampling of Metarhizium anisopliae var. frigidum and M. flavoviride var. flavoviride, each taxon was supported by 99% and 100% BP, respectively (FIG. 10
). In addition M. anisopliae var. frigidum strains contained a 17 base pair (bp) insertion consisting of GGGTGTCTTTTGCGTGT. Both M. flavoviride var. minus and M. flavoviride var. pemphigi included a homologous 16 bp insertion that differed only in lacking the third G (GG-TGTCTTTTGCGTGT). Strains of M. flavoviride var. flavoviride included no homologous insertion.
Based on these results we have determined that Metarhizium anisopliae var. frigidum is a distinct lineage and describe it below as Metarhizium frigidum sp. nov.
| TAXONOMY |
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Typus: AUSTRALIA. VICTORIA: BALLARAT, on an unidentified species of Adoryphorus (Coleoptera, Scarabaeidae), 10 Jun 1994, collected by Reinganum (BPI 872114 holotype; ARSEF 4124 ex-type).
Colonies on SDY/4 medium become pigmented within 5 d to a bright green to yellow green (color plate 28E7; Kornerup and Wanscher 1967
). Vegetative hyphae are smooth and 2.03.0 µm wide. Conidiophores bear terminal branches (14) each bearing 14 phialides, forming a palisade-like layer. Phialides are oval to cylindrical, 3.513.5 µm long and 2.03.5 µm wide. Conidia form columns in culture and are hyaline (green en masse), subglobose to cylindrical, often prominently guttulate, measure 4.58.0(9.0) x 2.04.0 µm and many have a minute attenuating point from which the conidium was released from the phialide.
Distribution: Known only from Australia.
| DISCUSSION |
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In a carbohydrate use and temperature regime study, Rath et al (1995)
often referred to DAT F-001 (= ARSEF 4124) as being a representative of a group of cold-active Metarhizium anisopliae strains that they designated M. anisopliae var. frigidum (= M. frigidum). Because their study lacked a molecular phylogenetic analysis and the morphology of M. frigidum is so similar to M. anisopliae it is easy to understand why it was considered a variety of the type species. Although this taxon was never formally described it seems likely that Rath et al (1995)
would have used ARSEF 4124 as the type. Furthermore this isolate is the source for the commercially developed biological control agent BioGreen GranulesTM (Rath et al 1995
). For these reasons we chose to designate ARSEF 4124 to represent the type of the species.
Without molecular data the delimitation of Metarhizium frigidum and M. anisopliae is difficult. These species share similar conidia and phialide characteristics. This is likely why Rath et al (1995)
associated M. frigidum with the M. anisopliae complex. However Driver et al (2000)
did not distinguish M. frigidum from M. flavoviride var. flavoviride because the ITS sequence data did not support this distinction and they did not evaluate the morphology of these two closely related taxa. In this study it was the combined use of morphological and multilocus molecular data that helped to identify M. frigidum as a distinct lineage.
When comparing Metarhizium frigidum to M. anisopliae some general morphological trends become evident. The conidia and phialides of M. anisopliae appear to be more consistently cylindrical than those of M. frigidum. In addition mature cultures of M. anisopliae are more darkly pigmented (FIGS. 9
, 11
). Collection location also might be useful because M. frigidum appears to be restricted to Australia while M. anisopliae is cosmopolitan. Although their host ranges overlap M. frigidum has been associated only with coleopterans whereas M. anisopliae has a broad host range, including coleopterans. Both species can be isolated from soil. It seems clear that M. frigidum is a somewhat cryptic species with respect to M. anisopliae and culture collections might include misidentified strains. Based on these results molecular characters are the most definitive way to distinguish these taxa.
The paraphyly of the M. flavoviride complex as well as evaluations of the other Metarhizium taxa previously not included in the Driver et al (2000)
study will be addressed in subsequent publications (Bischoff unpubl data).
| ACKNOWLEDGMENTS |
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The use of trade, firm or corporation names in this publication is for the information and convenience of the reader. Such use does not constitute an official endorsement or approval by the United States Department of Agriculture or the Agricultural Research Service of any product or service to the exclusion of others that may be suitable.
| FOOTNOTES |
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1 Corresponding author. National Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland 20894. E-mail: bischoff{at}ncbi.nlm.nih.gov
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