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Department of Botany and Institute for Cereal Crops Improvement, Tel Aviv University, Ramat Aviv, 69978, Israel
W.R. Bushnell 2
USDA-ARS, Cereal Disease Laboratory, 1551 Lindig Street, University of Minnesota, St. Paul, Minnesota 55108
E. Kosman
Institute for Cereal Crops Improvement, Tel Aviv University, Ramat Aviv, 69978, Israel
| ABSTRACT |
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Digital image analysis was used to measure dimensions of spores produced by Puccinia coronata, P. graminis, P. hordei, P. recondita, P. striiformis and P. triticina. Included were teliospores, basidiospores, urediniospores and, except for P. striiformis, pycniospores and aeciospores. Length, width and projection area of spores were measured with NIH Image or Scion software. By using limits on size, spores were automatically selected and measured, except for teliospores, which required manual elimination of the pedicel and separation of images of adhering spores. Length and width were determined as the major and minor axes of the best fitting ellipse for each spore. This procedure gave values for length and width close to results obtained with an ocular micrometer. Projection area was determined as the number of pixels within spore boundaries multiplied by the area represented by each pixel, giving values that are not feasible to obtain accurately with an ocular micrometer. Of the species studied, spores of P. recondita had the largest dimensions, P. triticina had the smallest. The rank of the six species based on increasing width, length or projection area was almost the same, using each spore type except pycniospores. Generally, differences of 5% in a given spore dimension between two species were significant. Differences between species were greater with basidiospores and aeciospores than with other spore types. Teliospores were unique in that length and width were negatively correlated, resulting in less variation in area than in length or width. The results indicate that image analysis is useful for measuring spore dimensions, that projection area of spores is a useful added parameter for characterizing rust species and that dimensions of teliospores, basidiospores, aeciospores and urediniospores each are potentially useful for differentiating species.
Key words: aeciospore, basidiospore, coronata, graminis, hordei, pycniospore, recondita, striiformis, teliospore, triticina, urediniospore
| INTRODUCTION |
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For Puccinia species on cereal hosts, spore dimensions and host range both tend to overlap between species, obscuring species boundaries. Distinctive morphological traits such as projections on teliospore caps of P. coronata or the extraordinarily long teliospores of P. elemi are useful when present. For most species, however, the more accurately spore dimensions can be determined the better will be the delineation of species. Spore dimensions have also been used to define groups within species such as subspecies (Savile 1984
).
Since their advent in recent years, software programs for digital image analysis have been used to investigate several aspects of fungus morphology and development. These include dimensions and shape of spores (Mitchell et al 1997
, Benyon et al 1998
), spore numbers ( Jones et al 1992
), spore germination (Paul et al 1993
, Oh et al 1996
), germ tube length (Hilber and Schüepp 1992
), length and branching of hyphae (OShea and Walsh 1996
) and size of mycelial aggregates (Adams and Thomas 1988
, Cox and Thomas 1992
, Tucker et al 1992
). Likewise, image analysis has been used to determine volume of yeast cells (Makarov et al 1998
), budding of yeasts (OShea and Walsh 1996
) and shifts from yeast-like to filamentous growth in dimorphic fungi (McCarthy et al 1998
).
For rust fungi, Hernandez et al (2002)
used image analysis to measure length and width of urediniospores and teliospores of P. hemerocallidis. Johnson et al (1999)
compared urediniospores of P. menthae isolates from spearmint and peppermint, showing that 15 of 18 characteristics, based mainly on dimension and shape, differed between isolates of the two groups. In an investigation of several members of the P. recondita complex from wheat, wild wheat and rye, image analysis was used to determine the length, width and projection area of teliospores (Anikster et al 1997
). The results showed that the rust collections fell into two groups differing in teliospore size: teliospores of group I (tentatively termed P. triticina) were smaller in both length and width than those in group II (the remaining members of the P. recondita complex). The differences in teliospore dimensions were most pronounced when comparison was based on area. Coupled with differences in host range and lack of sexual compatibility, the differences in teliospore dimensions contributed to the conclusion that group I was a species distinct from the rest of the P. recondita complex. Likewise spore dimensions obtained digitally were used to assist in the differentiation of groups within the P. allium complex (Anikster et al 2004
) and to define a new forma specialis of Puccinia triticina from Aegilops speltoides (Ben Yehuda et al 2004
).
Here we extend investigation of spore dimensions to include a total of six Puccinia species of cereal rusts (TABLE I
), including P. triticina and other members of the P. recondita complex as investigated earlier. For each species, isolates from several regions of the world were included to ensure thorough representation. Using image analysis, we measured length, width and projection area of all spore types produced by each species (as shown for P. recondita and P. triticina, FIG. 1
). Our objectives were: (i) to evaluate digital image analysis as an aid to measuring spore dimensions, including use of projection area as a potential descriptor for rust fungus species; (ii) to learn how differences in teliospore dimensions among species relate to dimensions of other spore types in the rust life cycle; (iii) to characterize variation in dimensions in populations of a given spore type within individual species. We found to our surprise that length and width of teliospores are negatively correlated (i.e., variation in length was compensated for by opposing variation in width).
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| MATERIALS AND METHODS |
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Teliospores.. Leaves from telia were brought in from the field and dried in paper bags on the laboratory bench for about a week. The bags then were stored in a refrigerator at 4 C for 2 mo to 10 y. For image analysis, teliospores were scraped from 1015 telial clusters and mounted in 50% aqueous glycerol under a cover slip on a glass microscope slide. At least five fields with 1020 spores/field were measured for each isolate.
Basidiospores..
Teliospores (in telia) were preconditioned for germination by incubating them 16 wk in distilled water at 4 C (Eilam et al 1992
). The telia then were placed on a wet filter paper on the lid of a Petri dish so that basidiospores ejected from basidia produced by the germinating teliospores would fall on cover slips on the bottom of the dish. After a sufficient number of basidiospores were ejected, usually after 20 h incubation at 18 C, the cover slips were inverted on a drop of 1% cotton blue in lactophenol on a microscope slide. The slide was heated briefly on an electric hot plate to 40 C; the basidiospores then were viewed under the microscope. For each isolate, spores were measured in 10 or more fields, each with 1020 spores. (Basidiospores of FIG. 1
were unstained.)
Pycniospores..
To harvest pycniospores, pycnia were touched lightly with a cover slip so that nectar (containing pycniospores) adhered as a droplet. The nectar was allowed to dry 10 min until pycniospores were affixed to the cover slip. A droplet of 1% cotton blue in lactophenol was placed on a microscope slide. The cover slip with pycniospores then was inverted and placed so the spores were immersed in the fixative under the cover slip. The slide was heated as described for basidiospores and examined under the microscope. At least four fields, each with about 200 spores, were measured for each isolate. (Pycniospores shown in FIG. 1
were unstained.)
Aeciospores and urediniospores.. Freshly harvested aeciospores and urediniospores were mounted under cover slips on slides in lactophenol at room temperature. A minimum of 10 microscope fields, each with about 20 spores, was measured for each isolate.
Image analysis.
Spore images were obtained by differential interference contrast (DIC) microscopy with a Zeiss Axioskop equipped with 10 x eyepieces. A 40x oil immersion Plan-Neofluar objective lens (N.A.1.30) was used for pycniospores; a 20x Plan-Neofluar lens (N.A. 0.50) was used for all other spore types. For analysis, microscope fields were selected in which illumination was uniform and spores were not crowded (FIG. 2
). Images were captured with a LIS 700 CCD black and white video camera (Applitec, Israel). Gain and offset were adjusted usually with the automatic option of the camera. Exposure time was usually 1/500 s. In initial experiments, video images were digitized with a 50 Hz (PAL) Quick Capture frame grabber (Data Translation, Marlboro, Massachusetts) in a Macintosh 8100. Later a video capture frame grabber (All in Wonder, ATI Technologies, Markham, Canada) was used with a NEC (Pentium 43 1 Mgh) Packard Bell PC computer. The result was a rectangular array of 640 x 480 pixels with gray levels in increments of 0255 steps. The width of the rectangle, as viewed on the computer screen (FIG. 2
), was equivalent to one-half the diameter of the original microscope field.
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| RESULTS |
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Evaluation of image analysis protocols. Because surfaces of aeciospores, teliospores and urediniospores are hydrophobic, small air bubbles accumulated around each spore if mounted in water, interfering with measurements. To counter this problem, spores were mounted in glycerin (for teliospores) or lacto-phenol (for the four other spore types). In preliminary trials comparing water to the mounting media used for each spore type, the media had no detectable effect on spore dimensions.
For all five spore types of an isolate of P. recondita, values for spore length and width obtained by image analysis were compared to values obtained directly with an ocular micrometer on the microscope and also to values obtained by using a ruler on the computer screen before the thresholding step. For measurements with the ocular micrometer, a 100x objective lens was used. For digital images a 20x objective lens was used except 40x for pycniospores, as in our standard protocol. Larger numbers of spores were present for measurement in individual microscope fields at 40x (used for pycniospores) or 20x (used for the other spore types) than at 100x, aiding rapid analysis of spore populations. Results for the three methods agreed within 7% of values obtained with the ocular micrometer (TABLE II
). This indicated that the thresholding step, the use of axes of the best fitting ellipse for length and width and other aspects of the image analysis procedure gave satisfactory results.
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For similar reasons, the rank of teliospores by increasing length did not relate to ranking by area (TABLE III
). Teliospores of all species had highly negative length/width correlation coefficients. This indicated that teliospore width decreased as length increased. This is illustrated by teliospore length/width plots for P. graminis (correlation coefficient, 0.66) and P. striiformis (correlation coefficient, 0.25) (FIG. 5
). Therefore rank of species by order of increasing length differed from rank by area. For example, teliospores of P. hordei ranked with P. triticina as having the shortest teliospores, in contrast to being the largest when ranked by area (TABLE III
).
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| DISCUSSION |
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The size of pycniospores, on the other hand, did not relate to size of the other four spore types. The pycniospore is highly specialized in that it functions in the environment of pycnial nectar in which it fuses to receptive hyphae (i.e., it does not require protection from drying out as do the other spore types, nor does it produce infection structures required for host cell wall penetration or entry through stomates, as in the case of aeciospores and urediniospores). Because of the similarity in relative spore size (except for pycniospores), differences between species tended to be similar whether based on teliospores, basidiospores, aeciospores or urediniospores. However differences in size between species were greater with basidiospores and aeciospores than with other spore types. Overall these relationships indicate that dimensions of basidiospores, aeciospores and urediniospores are potentially as useful as the more commonly used dimensions of teliospores in differentiating between species.
Digital image analysis aided measurement of spore length and width in that the spores could be measured more rapidly than if measured individually in the traditional way with an ocular micrometer on the microscope. The exception was measurement of teliospores, which individually required removal of the pedicel from spore images and, in many cases, separation of images when teliospores adhered to each other. For spores with relatively simple round or oval shapes, image analysis considerably speeds measurements of length and width, which is useful if large numbers of spores are to be measured. This, in turn, makes it easy to obtain enough spores for statistical analysis of results.
The principal advantage of image analysis, however, was the ability to measure projection area. Area was determined independently of length and width from the number of pixels within spore boundaries. This integrated the entire area of each spore regardless of shape. Projection area is potentially the most important single parameter for characterizing spore dimensions because it combines aspects of length, width and shape into a single value.
Furthermore, variation among spores tends to be less for square root values of projection area than for length or width, especially for teliospores. Although area measurements have not been used widely to characterize spores, image analysis makes area readily available as a potentially useful parameter, whether for taxonomic, genetic or physiological purposes.
Length and width of all spore types were determined as the major and minor axes of the best fitting ellipse for individual spores. The dimensions obtained in this way were similar to those obtained with an ocular micrometer (TABLE II
). We did not evaluate alternative methods for determining length, such as use of the longest chord within the spore image or the "fiber" length as measured along the medial axis of the spore ( Johnson et al 1999
).
Orientation of the spore in the field of view influences measured spore length and probably projection area. This was not a problem with teliospores, which tended to lie with their longest dimension parallel to the microscope slide (FIGS. 1A, B
, 3A, B
). The same was true for the elongated urediniospores of P. graminis (not shown). Orientation also was not a problem with spores with only small differences between length and width, including urediniospores of species other than P. graminis and aeciospores of all species. On the other hand, some basidiospores and pycniospores were not parallel to the slide when measured for image analysis.
Basidiospores, allowed to fall onto slides from germinating teliospores (in preparation for measurement), sometimes landed on one end and became affixed in a near vertical position, remaining in this position when mounted in lactophenol cotton blue. We could not dislodge such basidiospores without disrupting them. In a similar way some pycniospores were not parallel to the slide surface when mounted in lactophenol cotton blue. Nearly vertical pycniospores were eliminated because they were below the minimum area required to be included in the measured spore population. However, some spores at a low angle to the surface were included, which possibly reduced mean length values slightly. Because this error was probably similar for all species examined, we conclude that values obtained by image analysis for length or area of basidiospores and pycniospores (as in TABLE III
) are valid for comparing species.
The length/width ratio (aspect ratio) can be used to differentiate between species. For example, the length/width ratios for P. graminis urediniospores was 1.62 compared to a mean of 1.14 for the other five species (values derived from data of TABLE III
). The length/width ratio was one of 15 parameters Johnson et al (1999)
found to be different between two races of P. menthae. Length/width ratios of urediniospores also have been used to distinguish subspecies. Urediniospores of P. graminis subsp. graminis, thought to have evolved on domesticated cereals, had length/width ratios of 1.81.9 whereas urediniospores of P. graminis subsp. graminicola, predominantly a parasite of wild grasses, had ratios of 1.41.6 (Savile and Urban 1982
, Urban and Marková 1984
). Clay models were used by Savile and Urban (1982)
to estimate volume of urediniospore protoplasts. The resulting volumes of P. graminis subsp. graminis were 1.51.9 times greater than for P. graminis subsp. graminicola. Compared to such estimates of volume, area of urediniospores as determined by image analysis likely will be a more direct and useful way to compare subgroups with species. However length/width correlation coefficients also are useful for characterizing spores. Most spores in our investigation had coefficients that were positive or near zero (TABLE III
). Exceptions were the long urediniospores of P. graminis (correlation coefficient 0.15) and teliospores of all six species examined (correlation coefficient 0.22 to 0.66).
For teliospores the reduced width associated with increasing length results in less variation in area (as expressed by variation in square root of area) than in length or width (TABLE III
). As teliospores are formed in the crowded telium, length and width apparently are coordinated toward maintaining a constant projection area and, probably likewise, spore volume. The teliospore usually germinates in the telium, producing promycelia (basidia) and basidiospores there. It is not disseminated in air as are basidiospores, aeciospores and urediniospores. Having less need to maintain an aerodynamic shape, the teliospores can vary in length and width, while nevertheless maintaining uniform spore volume in support of ability to produce promycelia and basidiospores.
The basidiospores newly ejected from germinating teliospores frequently produced germ tubes before they were fixed for image analysis. The tubes fortuitously were eliminated in the threshold process used to generate binary images (FIG. 3D, E
). This happened because the base of the germ tube near the spore surface was narrow and had low optical contrast. However germ tubes can be eliminated by a skeletonization (erosion) procedure in which pixels are removed from the surface until germ tubes are eliminated (Hilber and Schüepp 1992
). Pixels then are restored over the surface of the image, which results in a full size image of the spore without the germ tube.
In addition to revealing patterns in spore dimensions among spore types and among species, the present investigation serves to emphasize projection area as an important parameter for characterizing rust spores. Useful for all spores in the rust life cycle, projection area is especially valuable for describing teliospores. Dimensions and morphology of teliospores are used widely as descriptors for rust species. Because of the negative length/width correlation as described earlier, variation in area is less than variation in length or width, potentially improving differentiation between species, especially when differences in teliospore dimensions are small.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Mention of a trademark name or proprietary product does not constitute a guarantee by Tel Aviv University, the University of Minnesota or the U.S. Department of Agriculture. ![]()
2 Corresponding author. E-mail: billb{at}umn.edu
| LITERATURE CITED |
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Anikster Y, Bushnell WR, Eilam T, Manisterski J, Roelfs AP. 1997. Puccinia recondita causing leaf rust on cultivated wheats, wild wheats, and rye. Can J Bot 75:20822096.
, Szabo LJ, Eilam J, Manisterski S, Koike ST, Bushnell WR. 2004. Morphology, life cycle biology, and DNA sequence analysis of rust fungi on garlic and chives from California. Phytopathology 94:569577.[Medline]
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McCarthy AA, OShea DG, Murray NT, Walsh PK, Foley G. 1998. Effect of cell morphology on dead-end filtration of the dimorphic yeast Kluyveromyces marxianus var. marxianus NRRLy2415. Biotechnol Prog 14:279285.[CrossRef][Medline]
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Oh K, Chen Y, Matsuoka H, Yamamoto A, Kurata H. 1996. Morphological recognition of fungal spore germination by a computer-aided image analysis and its application to antifungal activity evaluation. J Biotechnol 45:7179.
OShea DG, Walsh PK. 1996. Morphological characterization of the dimorphic yeast Kluyveromyces marxianus var. marxianus NRRLy2415 by semi-automated image analysis. Biotechnol Bioeng 51:679690.[CrossRef]
Paul GC, Kent CA, Thomas CR. 1993. Viability testing and characterization of germination of fungal spores by automatic image analysis. Biotechnol Bioeng 42:1123.[CrossRef]
Savile DBO, Urban Z. 1982. Evolution and ecology of Puccinia graminis. Preslia, Praha 54:97104.
. 1984. Taxonomy of the cereal rust fungi. In: Bushnell WR, Roelfs AP, eds. The cereal rusts. Vol. I. Orlando, Florida: Academic Press. p 79112.
Tucker KG, Kelly T, Delgrazia P, Thomas CR. 1992. Fully-automatic measurement of mycelial morphology by image analysis. Biotechnol Prog 8:353359.[CrossRef]
Urban Z, Marková J. 1984. Ecology and evolution of Puccinia graminis Pers. Rept Tottori Mycol Inst (Japan) 22:9196.
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