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USDA ARS Nematology Laboratory, Building 011A, Room 165B, BARC-West, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350
Stephen A. Rehner
USDA ARS Insect Biocontrol Laboratory, Building 011A, Room 214, BARC-West, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350
| ABSTRACT |
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An isolate of the nematode-trapping fungus Monacrosporium drechsleri was collected from cultures of the root-knot nematode Meloidogyne arenaria that had been maintained on tomato roots in greenhouse pots in Beltsville, Maryland. The plant-parasitic nematodes Heterodera glycines, Meloidogyne incognita and Pratylenchus zeae and the free-living nematodes Caenorhabditis elegans and Panagrellus redivivus were placed on colonies of M. drechsleri grown in Petri dishes to study ability of the isolate to trap various nematode hosts. None of the nematodes placed near adhesive knobs were motile within 1 d. To determine where M. drechsleri fits within the existing phylogeny of nematode-trapping fungi, the ITS1-ITS2 regions of rDNA and the nuclear gene EF1-
were sequenced for the new isolate of M. drechsleri, for the species M. parvicolle and M. lysipagum, and for an isolate of M. ellipsosporum distinct from the one listed in GenBank. Parsimony trees were constructed showing the closest molecular relative of M. drechsleri to be the newly sequenced isolate of M. ellipsosporum; the latter had a highly divergent sequence from the sequence recorded in GenBank for a different isolate of M. ellipsosporum. Unique, consistent and discrete morphological characters are absent in these related taxa, so an independent molecular character should be considered essential for their accurate identification.
Key words: Arthrobotrys, Caenorhabditis elegans, Dactylella, Dactylellina, Gamsylella, Heterodera glycines, Meloidogyne incognita, Monacrosporium, Monacrosporium ellipsosporum, Monacrosporium lysipagum, Monacrosporium parvicolle, nematode, nematophagous fungus, Panagrellus redivivus, Pratylenchus zeae
| INTRODUCTION |
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Monacrosporium drechsleri is described as having conidia that vary in shape but generally are somewhat fusiform, 2248.7 µm long x 9.515.4 µm wide, most with three septa (TABLE I
; description after Tarjan 1961
, Rubner 1996
). Conidiophores can be branched or unbranched. The fungus traps nematodes on short-stalked, adhesive knobs. The morphology of M. drechsleri somewhat resembles that of Monacrosporium ellipsosporum (Preuss) R.C. Cooke & C.H. Dickinson (Rubner 1996
), which is described in Rubners monograph (1996) as having spindle-shaped, mostly 4-septate conidia; measurements are listed (TABLE I
). Monacrosporium ellipsosporum also traps nematodes on stalked knobs and is of interest because it has been studied widely as a nematophagous fungus. For example, M. ellipsosporum was tested for ability to suppress root-knot nematode populations; the fungus was effective in some of the studies ( Jaffee and Muldoon 1995a
, b
, Persson and Jansson 1999
, Santos and Ferraz 2000
). Monacrosporium ellipsosporum also was active against the lesion nematode Pratylenchus penetrans (Timper and Brodie 1993
), but in another investigation caused little reduction in populations of the cyst nematode Heterodera schachtii, even though the fungus could parasitize H. schachtii in soil ( Jaffee et al 1992
, Jaffee and Muldoon 1995a
). However, little is known about the morphologically similar M. drechsleri. In laboratory tests M. drechsleri growing on agar media was a predator of Panagrellus sp. and Pratylenchus spp. (Pria et al 1991
, Tarjan 1961
), while another study indicated that an isolate of this species did not suppress Meloidogyne incognita populations significantly on roots (Pria and Ferraz 1996
).
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| MATERIALS AND METHODS |
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Morphology of live cultures was studied on PDA, CMA, and/or half-strength CMA (number of media used varied with species). Monacrosporium drechsleri also was grown on 1.5% water agar inoculated with surface-sterilized root-knot nematodes (M. incognita), which were obtained from greenhouse cultures (procedures for removing microbes from M. incognita described below). Measurements were made with a Leica DMIL microscope. Descriptive statistics and ANOVA were run in an Excel 2002 spreadsheet.
Herbarium specimens of M. drechsleri examined were: (i) USA, Florida: Lake Alfred, Citrus Experiment Station. Cornmeal agar, 16 July 1960, A.C. Tarjan, 415091 BPI, and (ii) USA, Florida: Lake Alfred, Citrus Experiment Station. Cornmeal agar, 16 May 1960, A.C. Tarjan, 418234 BPI. Tarjan (1961)
stated "Type cultures of Dactylella drechsleri are numbered F1636 in The National Fungus Collections, Plant Industry Station, United States Department of Agriculture, Beltsville, Maryland" (p 144). Without trying to settle nomenclatural problems associated with the deposit of the two type specimens, we simply note that both specimens are given the number F1636 and both are labeled "Holotype".
Nematode motility.
Beltsville Nematology Laboratory cultures of the two free-living nematodes Caenorhabditis elegans (N2 strain) and Panagrellus redivivus (LKC26) and of the three plant-parasitic nematodes Heterodera glycines (Race 3), M. incognita (Race 1) and Pratylenchus zeae (all plant parasites originally collected in Maryland) were used. Pratylenchus zeae (corn lesion nematode) was maintained on root explant cultures of corn (Zea mays) cv. Iochief grown on Gamborgs B-5 medium (Gibco, Life Technologies Inc., Grand Island, New York). Meloidogyne incognita and H. glycines were obtained from greenhouse pot cultures. Caenorhabditis elegans and P. redivivus were grown in a semi-defined liquid culture without bacteria (from Chitwood et al 1984
, except that the medium had only 10 µg of sterol per mL). To collect P. zeae sterile water was added to root explant cultures and the nematodes were pipetted into a sterile dish. The juveniles then were hand picked and centrifuged (this and other centrifugations in this section were done at 2000 x g) to increase the nematode concentration. Meloidogyne incognita cultures reared on tomato cv. Orange Pixie in greenhouse pots were collected by rinsing the tomato roots in water to remove soil and debris and hand-picking ripe egg masses, which were placed into water, rinsed and shaken in 6% sodium hypochlorite 2 min to break up egg masses. The eggs then were pipetted onto a 500-mesh sieve, rinsed with 95% EtOH and then with water, pipetted into sterile 1.5 mL microcentrifuge tubes, centrifuged 30 s, gently shaken 8 min in 6% sodium hypochlorite and centrifuged again. The supernatant was replaced with water, and the eggs were shaken, centrifuged again and washed with water. To obtain H. glycines (soybean cyst nematode), soil was washed off soybean (Glycine max) cv. Essex roots that had been grown in the greenhouse and infested with the nematode. Cysts then were collected on a 60-mesh sieve, centrifuged in water and then in a granulated sugar (sucrose) solution in water (454 g sugar/L). The supernatant containing the cysts was collected, rinsed, placed in a glass homogenizer and crushed to collect the eggs. The eggs then were treated as with root-knot nematode. Water suspensions of M. incognita and H. glycines were poured onto sterile polypropylene screens with apertures 25 µm diam; sterile broth cultures of C. elegans and P. redivivus were poured directly onto the screens. Juveniles that passed through the mesh were collected and centrifuged to concentrate the nematodes. Pratylenchus zeae could be used without passage through the screens.
To prepare M. drechsleri the fungus was inoculated onto PDA and incubated 47 d in the dark at 26 C. Plugs of fungus 1 cm diam were cut from near the peripheries of the fungal colonies, and one plug was placed into the center of each of 15 Petri dishes (60 mm diam) that contained a thin layer of 1.5% water agar with 0.3% penicillin (Sigma, St Louis, Missouri). The fungus grew 1 wk in the dark at 26 C, and each Petri dish then was inoculated with five 25 µL drops, each drop containing ca. 1020 nematodes. Drops were placed just inside the peripheries of the fungal colonies. Nematodes also were placed on control Petri dishes containing 1.5% water agar with 0.3% penicillin. For each trial of the experiment, each nematode test was replicated on a total of three fungus-treated Petri dishes and three control Petri dishes. The day after the nematodes were placed on the fungus cultures, counts were made of motile and nonmotile nematodes on each Petri dish. The experiment was repeated for a total of six fungus-treated Petri dishes and six control Petri dishes per tested nematode species.
DNA extraction, PCR, sequencing.
Cultures of the fungi were maintained on PDA at 26 C in the dark. Mycelia for DNA extraction were grown in potato dextrose broth (Difco Laboratories, Detroit, Michigan) at 25 C on a rotary shaker at 125 rpm 35 d. Mycelia were harvested by filtration or centrifugation, washed once with sterile distilled water, lyophilized and stored at 20 C. Approximately 50 mg of lyophilized mycelium was ground with 0.5 mm glass-zirconia beads (Biospec Products Inc., Bartlesville, Oklahoma) in a FastPrep FP120 tissue homogenizer (Thermo Savant, Holbrook, New York). DNA extractions were performed with modifications of a method by Cambereri and Kinsey (1993)
. Powdered mycelium was suspended in detergent solution (2 M NaCl, 0.4% w/v deoxycholic acid, 1.0% w/v polyoxy-ethylene 20 cetyl ether), incubated at 55 C for 15 min and extracted with an equal volume of 24:1 chloroform : isoamyl alcohol; the cellular debris plus glass-zirconia beads were pelleted by a 15 min centrifugation. The supernatant was mixed with an equal volume of 6 M guanidinium thiocyanate, and total nucleic acids were bound to glass powder (Vogelstein and Gillespie 1979
), washed twice with ethanol buffer and eluted into sterile distilled water. DNA for PCR amplifications was diluted to 12 ng/µL.
Two nuclear loci, the ribosomal internal transcribed spacers (ITS1, 5.8S rRNA, ITS2) and a partial sequence of the elongation factor 1-alpha (EF1-
) were amplified and sequenced. The ITS locus was amplified and sequenced with primers ITS5 (5'-GGAAGTAAAAGTCGTAACAAGG) and ITS4 (5'-TCCTCCGCTTATTGATATGC) (White et al 1990
). An approximately 1000 bp segment of EF1-
spanning the 3' two-thirds of the gene was amplified with primers 983F (5'-GCYCCYGGHCAYCGTGAYTTYAT) and 2218R (5'-ATGACACCRACRGCRACRGTYTG). PCR amplifications were performed in a reaction volume of 50 µL, which included 5 µL of 10x PCR buffer (10 mM Tris/HCl pH 8.0, 50 mM KCl, 1.52.0 mM MgCl2), 4 µL of dNTP mix (1.25 mM each dATP, dCTP, dGTP and dTTP), 10 pmol each primer, 0.5 µL Taq polymerase (Promega, Madison, Wisconsin) and 510 ng genomic DNA. PCR for both loci was performed with touchdown PCR (Don et al 1991
). Touchdown PCR amplifications were initiated with 2 min denaturation at 94 C. The annealing temperature in the initial amplification cycle was 66 C after which it successively was reduced 1 C per cycle over the next nine cycles. An additional 36 cycles were performed, each consisting of 30 s denaturation at 94 C, a 30 s annealing step at 56 C, and a 1 min extension at 72 C, concluding with 10 min incubation at 72 C. PCR reaction volumes were reduced to approximately 10 µL by lyophilization and then fractionated on a 1.5% NuSieve agarose gel (BioWhittaker, Rockland, Maine) in a low EDTA Tris-acetate buffer (40 mM Tris-acetate, 0.1 mM EDTA). PCR products were cut from the gel with a scalpel, frozen and thawed, and the DNA was extruded from the gel slice by centrifugation for 10 min at 20 000 x g.
PCR products were sequenced bidirectionally with ABI BigDye 2.0 (PE Applied Biosystems, Foster City, California) with 0.5 µL BigDye diluted in 1.5 µL dilution buffer (400 mM Tris/HCl pH 9.0, 10 mM MgCl2), 3 pMol primer, 75100 ng gel-purified PCR template in a total volume of 5 µL. ITS amplicons were sequenced with the ITS5 and ITS4 primers. EF1-
amplicons were sequenced with primers 983F and three internal primers, 1567RintB (5'-ACHGTRC CRATACCACCRAT), 1577F (5'-CARGAYGTBTACAAGA TYGGTGG) and 2212R (5'-CCRAACRGCRACRGTYYG TCTCAT). Cycle sequencing was performed according to the manufacturers instructions but with the total number of cycles raised to 35. Cycle sequencing products were precipitated by mixing with 4 volumes of 72% ethanol, incubating at room temperature 15 min and centrifuging at 3500 x g 15 min. The ethanol supernatant was removed by inverting the reaction vessel on a paper towel and centrifuging at 250 x g 10 s, air-dried 10 min at room temperature and stored at 20 C. Immediately before sequencing the reactions were suspended in deionized formamide, heat denatured and run on an ABI 3100 Genetic Analyzer. DNA sequences were assembled into contigs and edited with Sequencher 4.1 (Gene Codes Corp., Ann Arbor, Michigan), and multiple sequence alignments were constructed with the MegAlign module of DNASTAR 5 (LaserGene, Madison, Wisconsin), outputted in Nexus format for phylogenetic analysis and concatenated into a single file with MacClade 4 (Maddison and Maddison 2000
).
Sequences were submitted to GenBank. GenBank accession numbers for the nuclear gene EF1-
and the ITS1ITS2 sequences are respectively: AY695062
[GenBank]
and AY695063
[GenBank]
(M. drechsleri NL 565), AY695064
[GenBank]
and AY695065
[GenBank]
(M. ellipsosporum ATCC 204100), AY695066
[GenBank]
and AY695067
[GenBank]
(M. lysipagum ATCC 28265) and AY695068
[GenBank]
and AY695069
[GenBank]
(M. parvicolle ATCC 96680). GenBank accession numbers for other taxa used to make the trees are: U51946
[GenBank]
(Arthrobotrys haptospora), AY444596
[GenBank]
(Arthrobotrys oligospora), U51956
[GenBank]
(Dactylella formosana), AY444697
[GenBank]
(Duddingtonia flagrans), U51971
[GenBank]
(M. ellipsosporum CBS 224.54), AF106529
[GenBank]
(Monacrosporium leptosporum), U51959
[GenBank]
(Monacrosporium mammillatum), U51970
[GenBank]
(Monacrosporium phymatopagum), and AF106531
[GenBank]
(Monacrosporium tentaculatum).
Phylogenetic analysis.
The data were analyzed by maximum parsimony (MP) in PAUP 4.0b10 (Swofford 2001
) using the heuristic search option with TBR (tree-bisection-reconnection) branch-swapping under equal character weighting on all characters of Clustal W (Thompson et al 1994
) alignments from sequences pruned in GeneDoc (Nicholas et al 1997
). Searches included 500 random-addition replicate analyses and heuristic MP bootstrap analysis (Felsenstein 1985
) that consisted of 1000 pseudoreplicates with TBR branch-swapping with 10 random-addition replicates per pseudoreplicate and parsimony-uninformative characters excluded. Outgroups were selected based on broader alignments from trees not shown here. Sequence alignments were submitted to TreeBase. The TreeBase study accession number is S1151, and the matrix accession numbers are M2080 (FIG. 4
) and M1977 (FIG. 5
).
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| RESULTS |
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Most of the M. drechsleri NL 565 conidia were 3-septate, as also described by Tarjan (1961)
and Rubner (1996)
(TABLE I
), but two conidia with five septa each were observed on PDA. The other species listed (TABLE I
) generally produce more 4-septate conidia. However, M. lysipagum ATCC 28265 tended to have more 3-septate conidia than expected; the conidia were shorter and wider, with fewer septa, than M. lysipagum as reported by Drechsler (1937)
.
Stalked adhesive knobs were formed on mycelium (FIG. 1C
), on germinating conidia (FIG. 1D
), and on hyphal coils (FIG. 1E
). Stalk lengths, which are used as one character for separating the genera established by Scholler et al (1999)
, were measured in the current study. Lengths for M. drechsleri NL 565 were 9.4 ± 5.1 µm, ranging from 5.038.6 µm long (82 stalks measured). The mean length is similar to that reported by Tarjan (1961)
: stalks 7.9 µm (4.414.0 µm). Some NL 565 stalks were branched (FIG. 1F
). Drechsler (1937)
reported M. ellipsosporum stalk lengths to range most often from 510 µm (with extremes of 325 µm) and M. lysipagum stalk lengths to be 535 µm. We recorded stalk lengths of 7.9 ± 2.3 µm (5.012.5 µm) for M. ellipsosporum ATCC 204100 and 7.8 ± 2.5 µm (5.012.5 µm) for M. lysipagum ATCC 28265 (10 stalks were measured for each fungus). Stalks from M. lysipagum ATCC 28265 tended to be shorter than generally recorded for M. lysipagum. Monacrosporium parvicolle adhesive knobs were described as forming laterally on hyphae or on stalks 0.53.5 µm long (Drechsler 1961
); adhesive knobs were not observed on M. parvicolle ATCC 96680 in our study.
Formation of chlamydospores can depend on culture age and condition of nematode-trapping fungi and is not common in the new genus Dactylellina that includes nematode-trapping species with stalked knobs (Scholler et al 1999
). However, chlamydospores consisting of rounded, thick-walled cells were observed in cultures of the new isolate (FIG. 2A
), in the holotype specimen (FIG. 2B
) and in M. ellipsosporum (FIG. 2C
).
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sequence compared was 983 bp of exon sequence and was colinear for M. lysipagum, M. ellipsosporum and M. drechsleri. Monacrosporium parvicolle was 1038 bp; the increased sequence length was due to a unique 54 bp intron, but this sequence otherwise aligned perfectly with other sequences. Alignment of the sequences showed a close similarity between M. ellipsosporum and M. drechsleri, which differed by a single base pair in EF1-
sequence. Monacrosporium lysipagum and M. parvicolle differed significantly from each other and from M. ellipsosporum and M. drechsleri.
A large maximum-parsimony ITS1 and ITS2 tree of 18 nematode-trapping fungal taxa showed a clade of M. drechsleri with M. ellipsosporum and M. lysipagum (not shown). This allowed selection of out-groups A. haptospora (Drechsler) S. Schenck, W.B. Kendr. & Pramer and M. phymatopagum (Drechsler) Subram. for the taxa of interest to generate a tree of intermediate resolution. To compare the live M. drechsleri NL 565 culture with a live culture of the closest known molecular relative, M. ellipsosporum (ATCC 204100) was included in our study. The GenBank sequence (Liou and Tzean 1997
) of the UK isolate of M. ellipsosporum (Centraalbureau voor Schimmelcultures [CBS] 224.54) identified by S.M. Dixon (Rubner 1996
) was greatly divergent from that of California M. ellipsosporum ATCC 204100 identified by B. Jaffe and sequenced in our study (FIG. 4
). Monacrosporium ellipsosporum CBS 224.54 was more similar to M. mammillatum (isolate CBS 486.63, which originally was preserved as Dactylella lysipaga and later identified as M. mammillatum by Rubner 1996
), a species that also produces stalked knobs.
Based on overall similarity comparison for fragment size and sequence, M. drechsleri was related most closely to M. ellipsosporum ATCC 204100 (91% identity versus 88% identity with M. ellipsosporum CBS 224.54). This similarity was reflected in the ITS parsimony tree (FIG. 4
) where M. drechsleri was positioned as sister taxon of M. ellipsosporum ATCC 204100. Monacrosporium lysipagum ATCC 28265 was positioned outside these two species, and M. parvicolle ATCC 96680 was positioned outside these three species (FIG. 4
). The smaller EF1-
tree (FIG. 5
) had identical topology for this clade of taxa but with higher bootstrap support (99 versus 77%) for M. drechsleri + M. ellipsosporum, lower support (86 versus 97%) for M. lysipagum outside, and higher support for M. parvicolle (100 versus 80%) outside the three species.
| DISCUSSION |
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The new isolate of M. drechsleri (NL 565) varies morphologically somewhat from the original description in the frequency of 4-septate conidia (and by the observations of 5-septate conidia), the low numbers of biseptate conidia and the formation of chlamydospores (although these were observed on the holotype).
In the ITS tree it is notable that two isolates identified as M. ellipsosporum, ATCC 204100 and CBS 224.54, were phylogenetically so distant. While a distinguishing feature of mostly 4-septate conidia in M. ellipsosporum ATCC 204100 was present, the range of conidial measurements recorded for this isolate tended to be somewhat lower than the range reported by Rubner (1996)
for M. ellipsosporum (TABLE I
), although the ranges were overlapping. The conidial measurements for the M. ellipsosporum CBS 224.54 isolate were unavailable for a direct comparison with the other isolates. The CBS 224.54 isolate did not sporulate at the time it was examined by Rubner (1996)
, and morphological measurements were not provided with the original ITS tree (Liou and Tzean 1997
). Thus we cannot be certain that the CBS isolate is any closer to type than the ATCC isolate. The differences between the M. ellipsosporum pair of morpho-species might indicate a species complex requiring further taxonomic consideration. Some variation is to be expected among ITS sequences within populations of a species, so other molecules and taxa are needed to better interpret the phylogeny in this group. Because there are no unique, discrete morphological characters associated with these trees at this phylogenetic level, for identification purposes it is clear that morphology should be supplemented with at least one molecular identifier for this group of fungi.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Corresponding author. E-mail: meyerf{at}ba.ars.usda.gov
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