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Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, South Africa
Greg I. Johnson
ACIAR, P.O. Box 1571, Canberra, ACT 101, Australia
Pedro W. Crous
Centraalbureau voor Schimmelcultures, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
Teresa A. Coutinho
Brenda D. Wingfield
Michael J. Wingfield
Department of Microbiology and Plant Pathology, and Department of Genetics, Forestry and Agricultural Biotechnology Institute, Faculty of Natural and Agricultural Sciences, University of Pretoria, Pretoria, South Africa
| ABSTRACT |
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Species of Botryosphaeria are among the most serious pathogens that affect mango trees and fruit. Several species occur on mangoes, and these are identified mainly on the morphology of the anamorphs. Common taxa include Dothiorella dominicana, D. mangiferae (= Natrassia mangiferae), D. aromatica and an unidentified species, Dothiorella long. The genus name Dothiorella, however, is acknowledged as a synonym of Diplodia. This study aimed to characterize and name the Botryosphaeria spp. associated with disease symptoms on mangoes. To achieve this isolates representing all four Dothiorella spp. mentioned above were compared with the anamorphs of known Botryosphaeria spp., based on conidial morphology and DNA sequence data. Two genomic regions were analyzed, namely the ITS rDNA and ß-tubulin regions. The morphological and molecular results confirmed that the fungi previously identified from mango as species of Dothiorella belong to Fusicoccum. Dothiorella dominicana isolates were identical to isolates of F. parvum (teleomorph = B. parva). A new epithet, namely F. mangiferum, is proposed for isolates previously treated as D. mangiferae or N. mangiferae. Isolates of D. aromatica were identified as F. aesculi (teleomorph = B. dothidea). A fourth Fusicoccum sp. also was identified as those isolates previously known as Dothiorella long. A key is provided to distinguish these species based on anamorph morphology in culture. This study provides a basis for the identification of Botryosphaeria species from mango, which is important for disease control and to uphold quarantine regulations.
Key words: Conidia, dieback, Fusicoccum, identification, mango, phylogeny, soft rot, stem-end rot, taxonomy
| INTRODUCTION |
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Botryosphaeriaceous fungi considered as pathogens of mango trees and fruit are best known by their anamorph states. Some of the most commonly encountered species are Dothiorella dominicana Petr. & Cif., D. mangiferae Syd. & P. Syd., D. aromatica (Sacc.) Petr. & Syd. and an unnamed species, Dothiorella long ( Johnson 1992
). These names, however, are in need of revision. Dothiorella mangiferae has been reduced to synonymy under Nattrassia mangiferae (Syd. & P. Syd.) Sutton & Dyko (Sutton and Dyko 1989
). This synonymy has been recognized by some researchers (Londsdale 1992, Roux 1993
) but disputed by others ( Johnson 1991a
, b
, 1992
). In addition the type species of Dothiorella was synonymized recently under Diplodia, raising questions about the correct generic affinities of all species presently placed in Dothiorella (Crous and Palm 1999
).
Not all Dothiorella spp. are of equal importance as pathogens of mango. Dothiorella dominicana is the most common pathogen and causes significant losses annually (Darvas 1991
, Johnson et al 1991a
). Dothiorella mangiferae is found on mango trees worldwide, especially in Australia and Thailand (Sydow et al 1916
; Johnson et al 1991a
, 1992
; Mitra and Baldwin 1997
). Dothiorella aromatica (Sacc.) Petr. & Syd., and an unnamed species, Dothiorella long, occasionally have been recorded from mango in Thailand and Australia but are of less importance ( Johnson et al 1991a
, Johnson 1992
). Dothiorella aromatica has been reported from mango but is better known as a pathogen of avocado ( Johnson 1992
, Johnson et al 1992
, Hartill 1991
).
It has been suggested that all Dothiorella spp. occurring on mango should be accommodated in the genus Fusicoccum ( Johnson 1992
). In that study it is suggested that D. dominicana is a synonym of F. aesculi Corda (B. dothidea [Fr. : Moug.] Ces. & De Not.), and that D. aromatica should be placed in Fusicoccum with F. luteum Pennycook & Samuels as a synonym. He also suggested that D. mangiferae should be recombined in Fusicoccum as the anamorph of B. parva Pennycook & Samuels, and that Dothiorella long is F. cajani (Syd., P. Syd. & E.J. Butler) Samuels & Singh (teleomorph B. xanthocephala [Syd., P. Syd. & E.J. Butler] Theissen). The new taxonomic combinations, however were, not formally proposed.
Other researchers have reported species of Fusicoccum from mango and avocado. Hartill (1991)
examined botryosphaeriaceous fungi from avocado in New Zealand that had been described previously as Dothiorella species. He concluded that they were either F. aesculi, F. parvum Pennycook & Samuels or F. luteum. In California Ramos et al (1991)
observed the Fusicoccum anamorph of B. ribis Grossenb. & Duggar from mango plants.
Anamorph morphology is used commonly to identify species of Botryosphaeria (Shoemaker 1964
, Pennycook and Samuels 1985
, Jacobs and Rehner 1998
, Slippers et al 2004
). The morphological distinctions of the anamorphs of some of the closely related species, however, are not clear. Recent studies using DNA sequence data have highlighted taxonomic groups and relationships in Botryosphaeria ( Jacobs and Rehner 1998
, Denman et al 2000
, Smith et al 2001
, Smith and Stanosz 2001
, Zhou and Stanosz 2001
, Slippers et al 2004
). These data combined with morphological characteristics could clarify the current taxonomic confusion. There is a clear need to use the same approach to clarify the relationships and identities of the stem-end rot pathogens of mango.
The aim of this study was to re-evaluate the status of the anamorph names of Botryosphaeria species from mango in Australia and determine their relation to other Botryosphaeria spp. DNA sequence data from the internal transcribed spacer regions (ITS1 and ITS2) and 5.8S gene of the rRNA operon and the ß-tubulin gene were used in combination with morphological characteristics to characterize and name the different Dothiorella spp. The taxonomy of B. rhodina (Berk. & Curt.) von Arx (anamorph = Lasiodiplodia theobromae [Pat.] Griffon & Maubl.), another Botryosphaeria sp. that commonly occurs on mango in Australia, is not considered in this study.
| MATERIALS AND METHODS |
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To compare the sequence data determined in this study with those of known taxa, 15 ITS rDNA sequences and 15 ß-tubulin sequences obtained from GenBank were included in the analyses (TABLE I
). These sequence data included those of B. dothidea, B. ribis and B. parva from a study of type material and ex-type cultures (Slippers et al 2004
), as well as other sequence data of related Botryosphaeria spp. ( Jacobs and Rehner 1998
, Smith et al 2001
, Smith and Stanosz 2001
, Zhou and Stanosz 2001
). BLAST searches were done to identify any other related sequence data to the fungi studied here. A Bionectria sp. was included as an out-group taxon in the analyses. Despite the relationship between outgroup and ingroup taxa, unambiguous alignment of intron regions of the outgroup sequence with the in-group was not always possible, due to the high degree of sequence variation within these regions. Analysis with and
Sequence data determined in this study were analyzed using Sequence Navigator 1.0.1TM (Perkin Elmer Applied Biosystems, Foster City, California). These data were aligned manually with each other and with the data obtained from GenBank by inserting gaps. Gaps were treated as a fifth character, and all characters were unordered and of equal weight. Partition homogeneity tests (Farris et al 1995
, Huelsenbeck et al 1996
) were run in PAUP (Phylogenetic Analysis Using Parsimony) 4.0b8 (Swofford 1999
) to determine whether the ITS rDNA and ß-tubulin sequence datasets were congruent and, therefore, combinable. These data then were analyzed together to determine possible phylogenetic relationships among the taxa using parsimony in PAUP. To construct maximum parsimonious trees from the data, heuristic searches were done using informative characters and stepwise (random) addition and tree bisection and reconstruction (TBR) as branch-swapping algorithm. MaxTrees were unlimited, branches of zero length were collapsed and all multiple, equally parsimonious trees were saved. Levels of homoplasy and phylogenetic signal (retention and consistency indices and g1-value) (Hillis and Huelsenbeck 1992
) were determined. Branch and branch node supports were determined using 1000 bootstrap replicates (Felsenstein 1985
) and decay analysis of the branch nodes using Autodecay (Eriksson 1998
).
| RESULTS |
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A partition homogeneity test showed that the ITS rDNA and ß-tubulin datasets were congruent (P value = 0.2). Evaluation of random trees showed that the combined datasets contained significant phylogenetic signal (P < 0.01; g1 = 0.72) (Hillis and Huelsenbeck 1992
). Heuristic searches found two equal, most parsimonious trees (tree length = 544 steps; CI = 0.746; RI = 0.885) (TreeBASE Study accession number = S1101) (FIG. 8
). The nine clades in these trees were identified as: clade I = B. ribis, clade II = B. parva, clade III = F. mangiferum, clade IV = B. eucalyptorum Crous, H. Smith & M.J. Wingf., clade V = B. lutea A.J.L. Phillips, clade VI = Fusicoccum sp., clade VII = B. dothidea, clade VIII = B. obtusa (Schwein.) Shoemaker and B. stevensii Shoemaker, and clade IX = B. rhodina. All were supported by high bootstrap values (>99%).
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| TAXONOMY |
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1. Botryosphaeria parva Pennycook & Samuels, Mycotaxon 24:455. 1985.
Anamorph. Fusicoccum parvum Pennycook & Samuels, Mycotaxon 24:455. 1985. FIG. 2
Notes.
The anamorph state of B. parva has been identified commonly from mango as D. dominicana. The conidia from putative D. dominicana isolates collected from mango in Australia ( Johnson 1992
) are identical to those reported from the type of F. parvum (Pennycook and Samuels 1985
, Slippers et al 2004
). The data from these studies (TABLE II
) show that this taxon can be distinguished from other botryosphaeriaceous fungi on mango by conidial characteristics. The most recognizable characteristics of these conidia are that they are aseptate, hyaline, granular, broadly ellipsoid to fusoid, on average 1719 x 56 µm (see KEY). Older, discharged conidia sometimes become 12-septate and light brown with darker middle cells. Septate conidia with distinctly darker middle cells in this fungus have been confused with N. mangiferae and D. mangiferae (Sutton and Dyko 1989
, Roux 1993
).
Although the mango isolates identified as D. dominicana are here conspecific with B. parva, the true identity of the type of D. dominicana remains unclear. The dimensions reported in the original description of D. dominicana from mango leaves by Petrak and Ciferri (1930)
fall within the range of F. parvum. Johnson (1992)
re-examined and described the type material of D. dominicana, which he considered to be synonymous with B. dothidea. The conidia reported by Johnson (1992)
from the D. dominicana type material, however, are smaller than the anamorphs of either B. dothidea or B. parva. Despite this uncertainty, it is clear that the name D. dominicana is not appropriate for isolates associated with stem-end rot and other diseases of mango in Australia.
2. Fusicoccum mangiferum (Syd. & P. Syd.) Johnson, Slippers & M.J. Wingf. comb. nov. FIGS. 35
Basionym. Dothiorella mangiferae Syd. & P. Syd., In H. Sydow, P. Sydow & Butler, Ann. Mycol. 14:192. 1916.
Synonyms. Natrassia mangiferae (Syd. & P. Syd.) B. Sutton & Dyko, Mycol. Res. 93:484. 1989.
Hendersonula toruloidea Natrass, Trans. Br. Mycol. Soc. 18:197. 1933.
Hendersonula cypria Natrass, Cypress fungi, Nicosia: 43. 1937.
Synanamorph. Scytalidium dimidiatum (Penz.) B. Sutton & Dyko, Mycol. Res. 93:484. 1989.
Teleomorph. Botryosphaeria sp.
Notes.
Various morphological descriptions have been given for this taxon. The species was described first by Sydow et al (1916)
from M. indica in India. Sutton and Dyko (1989)
studied the holotype and the types of H. toruloidea connected with this taxon, including the holotype, and provided a very thorough description. Other clear descriptions are found in Natrass (1933)
, Punithalingam and Waterston (1970)
and Johnson (1992)
.
Duplication of previous descriptions is avoided here, but the most distinctive features are highlighted. The conidia of F. mangiferum are distinct from other Fusicoccum spp. by their shorter average length (~1314 µm) and smaller length/width ratio (22.5) (see KEY). The conidia often become 1- or 2-septate, light brown with distinctly darker middle cells. This feature is shared also with F. parvum. Fusicoccum mangiferum produces vegetative, toruloid cells in culture and in nature. This species also produces fluffy, evenly gray-colored aerial mycelium, lacking the white tufts found in other similar species such as F. parvum.
Sydow et al (1916)
described D. mangiferae from mango but noted only the aseptate conidia. Re-examination of the type material, however, confirmed the presence of 12-septate, pigmented conidia (Sutton and Dyko 1989
). It is possible that the spores on the type material aged and became septate after the description by Sydow. Natrass (1933)
studied the taxon from pome and stone fruit trees and first noticed the pigmented conidia, which led him to describe it as Hendersonula toruloidea Natrass. He also studied the fungus in culture and noted the characteristic brown 1- or 2-celled, toruloid, vegetative cells. Sutton and Dyko (1989)
synonymized both D. mangiferae and H. toruloidea with Natrassia mangiferae.
Natrass (1933)
and Sutton and Dyko (1989)
reported fragmented mycelial cells or toruloid cells in culture and in nature. In the last named study, this form was described as the synanamorph Scytalidium dimidiatum. Johnson (1992)
reported no toruloid state but referred only to these cells as fragmented mycelia and he did not use the last named epithet. The cells described by Natrass (1933)
and Sutton and Dyko (1989)
rarely were observed in this study and when seen, resembled fragmented, thick-walled hyphae.
Sutton and Dyko (1989)
reduced Fusicoccum eucalypti Sousa da Câmara and H. agathi to synonymy with F. mangiferum (as N. mangiferae). These synonymies are not accepted here because the conidia of both taxa differ from those of F. mangiferum in length and in length/width ratio (Young 1948
, Sutton and Davison 1983
, Sutton and Dyko 1989
). The conidial sizes reported in these studies for F. eucalypti and H. agathi were more similar to those of F. parvum.
The teleomorph of F. mangiferum is a Botryosphaeria sp. The DNA sequence data presented here group this species with the type species B. dothidea and other Botryosphaeria sp. Johnson (1992)
also reported Botryosphaeria ascomata and ascospores forming in cultures of F. mangiferum ( Johnson 1992
). Sufficient material, however, was not available to describe formally a specific name for the teleomorph.
3. Botryosphaeria dothidea (Moug. : Fr.) Ces. & De Not., Comment. Soc. Crittog. Ital. 1:212. 1863.
Anamorph. Fusicoccum aesculi Corda in Sturm, Deutschl. Fl., Abth. 3, 2:111. 1829. FIG. 6
Notes.
Previous reports of this fungus from mango and avocado were misidentified as D. aromatica. Conidial morphology of this species as described from mango is similar to that described for the anamorph of B. dothidea (Pennycook and Samuels 1985
, Slippers et al 2004
). The most distinctive feature of this taxon is its conidia, which are aseptate, hyaline, fusiform to narrowly fusiform and on average 2325 x 45 µm (see KEY).
The type specimen of D. aromatica (Sacc.) Petr. & Syd. (= Macrophoma aromatica Sacc.) (Saccardo 1915
, Petrak and Sydow 1927
) was obtained from PAD (497) on Perseae gratissimae (avocado) leaves. The conidia are fusiform, aseptate and 2022 x 67 µm and most closely resemble those of F. luteum (Pennycook and Samuels 1985
, Phillips et al 2002
). Fusicoccum luteum also has been reported from avocado (Hartill 1991
, Johnson 1992
). We, therefore, consider D. aromatica to be a synonym of F. luteum. Although the type specimen of D. aromatica does not resemble F. aesculi (Crous and Palm 1999
, Slippers et al 2004
), the fungus occurring as a pathogen of mango and generally misidentified as D. aromatica is F. aesculi.
Notes.
Johnson et al (1991a)
and Johnson (1992)
identified an unknown Dothiorella or Fusicoccum sp. from mango in Australia and Thailand, which was referred to only as Dothiorella long. DNA sequence and morphological data presented here confirm that isolates defined as Dothiorella long represent one, probably undescribed Fusicoccum sp.
Johnson (1992)
considered this Fusicoccum sp. as possibly synonymous with F. cajani (teleomorph = B. xanthocephala). Samuels and Singh (1986)
described F. cajani causing stem canker in Cajanus spp. (pigeon pea) from Fiji, India and the USA. Conidial measurements of F. cajani [(17)21.627.8(32) x (5) 6.58(9) µm] and the Fusicoccum sp. (average = 26.6 x 6 µm, see TABLE II
) considered here, overlap. This alone, however, is not sufficient evidence for synonymy. For example, the measurements and the shape of the conidia of F. cajani overlap with the anamorphs of a number of other Botryosphaeria spp., such as B. lutea (Pennycook and Samuels 1985
, Phillips et al 2002
), B. eucalyptorum (Smith et al 2001
), B. protearum Denman and Crous (Denman et al 2003
) and others. Given differences in hosts and diseases, it is unlikely that Dothiorella long is F. cajani. No isolates of B. xanthocephala could be located to further test this hypothesis, using molecular or cultural characters.
| KEY TO BOTRYOSPHAERIA SPP. AND THEIR ANAMORPHS FROM MANGO IN AUSTRALIA |
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| DISCUSSION |
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The description of Dothiorella spp. from mango as Fusicoccum spp. is in accordance with recent proposals for the correct use of these two generic names (Crous and Palm 1999
, Denman et al 2000
). Fusicoccum and Dothiorella often have been confused because both have been used commonly to describe anamorphs of Botryosphaeria (Saccardo 1882
, Petrak 1922
, von Arx and Müller 1954
). The common use of the name Dothiorella for suspected Botryosphaeria anamorphs from mango follows Sydow et al (1916)
and Petrak (1922)
. D. pyrenophora Sacc., the type species of Dothiorella, recently was redescribed as Diplodia pyrenophora (Sacc.) Crous & M.E. Palm (Crous and Palm 1999
). These authors suggested that all Botryosphaeria anamorphs that are placed in Dothiorella should be re-examined. Denman et al (2000)
argued that all hyaline, thin-walled fusiform conidial Botryosphaeria anamorphs are Fusicoccum.
Results of this study and those of Johnson (1992)
show clearly that B. parva (reported as D. dominicana) is one of the most common pathogens of mango causing fruit stem-end rot, dieback and blossom blight. The species first was described by Pennycook and Samuels (1985)
from Populus, Malus and Actinidia species in New Zealand. It subsequently was shown that this species occurs worldwide on a number of hardwood species, including native Australian flora such as Eucalyptus spp. (Slippers et al 2004
). Botryosphaeria parva often has been misidentified as B. ribis and B. dothidea due to overlapping host ranges, morphological similarities and taxonomic confusion over the use of the names (Slippers et al 2004
). Thus it also is likely that the fungus described as B. ribis from mango in Florida (Ramos et al 1991
) is B. parva. These identifications from Florida were based on conidial dimensions, which overlap between B. ribis and B. parva (Slippers et al 2004
).
The name F. mangiferum has been proposed in this study for the mango pathogen that previously was identified as D. mangiferae and Natrassia mangiferae. Johnson (1992)
first suggested that D. mangiferae and N. mangiferae should be placed in Fusicoccum. This proposal is supported in the current study by the phylogenetic monophyly of this taxon with the type species F. aesculi and other Fusicoccum spp. Isolates used for sequence analyses were not ex-type cultures. The conidia of these isolates were, however, morphologically indistinguishable from the type specimens of D. mangiferae (Sutton and Dyko 1989
, Sydow et al 1916
).
The septation and pigmentation of conidia of F. mangiferum and F. parvum have obvious similarities. This has led to confusion between these taxa in the past. These species, however, can be separated by conidial size because conidia of the former species are smaller in average length and width. Moreover in culture F. parvum has fluffier aerial mycelium than the appressed gray aerial mycelium of F. mangiferum.
Botryosphaeria dothidea is of little importance as a pathogen of mango in Australia or other parts of the world. It is less common on mango than B. parva and F. mangiferum and is omitted often from lists of important pathogens of this host ( Johnson et al 1991a
, b
, 1992
; Johnson 1992
). This name, however, is one of the most commonly used for Botryosphaeria pathogens on a wide variety of other hosts (Mc-Glohon 1982
, Pennycook and Samuels 1985
, Brown and Britton 1986
, Hartill 1991
, Jacobs and Rehner 1998
, Smith et al 2001
). Some of these identifications need to be viewed with care because many species have been relegated incorrectly to the name B. dothidea. This followed the extensive synonymy of many species with B. dothidea by von Arx and Müller (1954)
. Due to this synonymy, B. ribis was treated as a synonym of B. dothidea. Botryosphaeria parva often was not distinguished from B. ribis and consequently was treated also under B. dothidea (Slippers et al 2004
).
Reports of B. dothidea from Australasia and other Southern Hemisphere countries are from exotic hosts (Pennycook and Samuels 1985
, Hartill 1991
, Slippers et al 2004
). Studies of pathogens of native hosts in Australasia have not reported this pathogen (Denman et al 2003
). This species, however, is common on both cultivated and indigenous hosts in the Northern Hemisphere (Zhou and Stanosz 2001
, Slippers et al 2004
). This suggests a Northern Hemisphere origin for this fungus and implies that it was introduced into the Southern Hemisphere with planting material of agricultural crops.
The taxon previously known from mango as Dothiorella long is identified in this study as an undescribed species of Fusicoccum. This species was found rarely in extensive surveys during previous studies and is not considered important in causing pre- or postharvest diseases of mango ( Johnson et al 1991a
, Johnson 1992
). This species of Fusicoccum is not known from any other hosts. Further collections and studies are needed to understand the distribution and biology of this fungus.
Johnson (1992)
suggested that F. luteum (teleomorph B. lutea) occurs on mango in Australasia. None of the Fusicoccum spp. from mango in Australia group with this taxon, based on DNA sequence data produced in this study. This finding is surprising because F. luteum seems to be common in Australasia. Fusicoccum luteum initially was described from Actinidia, Malus and Pyrus in New Zealand (Pennycook and Samuels 1985
) and subsequently also from avocado (Hartill 1991
).
Sequence variation was observed among isolates of clade VI (Fusicoccum sp.) and clade VII (B. dothidea) that was not phylogenetically informative. Among the three isolates identified in clade VI one isolate had sequence variation only in the ß-tubulin region. In clade VII the three isolates from mango grouped together based on two variable bases in the ITS region. In both cases these variable characters thus were found only in one of the two sequenced regions. Additional data and a larger number of isolates are required to determine the extent of variation and its phylogenetic relevance to populations of the above clades.
The many misidentifications of botryosphaeriaceous fungi from mango illustrate aptly how confusing morphological characterization of these fungi has been. This problem resulted from the fact that continuous characters for these species overlap. The confusion was amplified by differences in morphological characters from nature and from culture (Slippers et al 2004
, Johnson 1992
). Furthermore, conidial septation and color, which have been used to characterize species, was not always consistent. Conidia tend to age only after discharge from the pycnidia and their color and septation changes with age.
This study provides a basis on which future identifications of Botryosphaeria and its anamorphs from mango can be made. The combination of molecular data and average conidial size and shape, as well as cultural characteristics, has been used successfully here to identify these fungi from mango. Correct identifications of these pathogens are crucial due to increased quarantine requirements. These data also will help studies for a better understanding of the epidemiology of the different fungal species.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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1 Corresponding author. E-mail: bernard.slippers{at}fabi.up.ac.za
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