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USDA-ARS, Root Disease and Biocontrol Laboratory, 365 Johnson Hall, Washington State University, Pullman, Washington 99164-6430
Mark Mazzola
USDA ARS Tree Fruit Research Lab, 1104 N Western Ave, Wenatchee, Washington 98801-1230
| ABSTRACT |
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A new species of Pythium isolated from wheat and apple roots in eastern Washington is described. Pythium abappressorium sp. nov. is characterized by abundant appressoria. Plerotic oospores and sporangia are formed from the appressoria and remnants of the appressoria remain attached to the base of sporangia at maturity. Smaller appressorial swellings, reminiscent of hyphal swellings, are also formed within the appressoria. Pythium abappressorium is pathogenic to wheat, causing damping-off and stunting, but is not pathogenic to apples. The fungus can grow in the temperature range 5 to 30 C, with an optimum of 20 C. The sequence of the ITS1 region of the rDNA did not match the sequences from a worldwide collection of over 1200 isolates, including types and neotypes, suggesting that this species has not been previously described.
Key words: apple, appressoria, biological control agent, damping-off, Malus domestica, root rot, Triticum aestivum, wheat
| INTRODUCTION |
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| MATERIALS AND METHODS |
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Pathogenicity testing
Inoculum of P. abappressorium was prepared in autoclaved sandy loam amended with 1% ground rolled oats (Paulitz and Baker 1987
). The oatmeal-soil was prepared in 1-quart narrow mouth Mason jars, with a 0.5-cm hole drilled in the lid, with a 70-mm diameter filter disk (Fungi Perfecti, Corvallis, Oregon) placed inside the lid to maintain air exchange and sterility. Each of two strains (010111 and 010112) was separately transferred to the jars in the form of PDA plugs. The jars were shaken, and incubated for 3 wk. Propagule density was assessed with dilution plating on Pythium selective medium. Inoculum was mixed by hand into pasteurized sandy loam (from WSU Dryland Research Station, Lind, Washington) at a rate of 1000 cfu/g and placed in 10-cm square pots. Controls consisted of pasteurized sandy loam without any inoculum added. Four replicate pots were used for each treatment, and each pot was planted with five seeds of Triticum aestivum L. cv. Penawawa. Pots were placed in a temperature controlled growth room at 16 C, 12 h light/dark.
Effect of temperature on growth The growth rate of isolates 020125, 020135 and 90089 were measured on 15-cm-diameter petri plates of PDA. Three replicate plates of each isolate were inoculated with a 3-mm plug, and placed in a growth chamber at 5, 10, 15, 20, 25, 30, and 35 C. One experiment was done separately for each temperature.
DNA extraction, PCR amplification, and sequencing DNA was isolated from 7- to 10-d-old cultures of isolates grown in 5 mL of potato dextrose broth (Difco, Becton Dickinson) in 12.5 cm x 1.5 cm tubes at room temperature on an orbital shaker at ca 110 rpm. Mycelial mats were washed 1x with distilled water then added to FastDNA tubes (FastDNA Kit, Bio101, Carlsbad, California 92008) with 200 µL sterile distilled water. One mL of CLS-Y cell lysis solution was added and samples were homogenized in an FP 120 FastPrep Cell Disruptor (Thermo Savant, Holbrook, New York 11741) at speed 4 for 40 s. Samples were then centrifuged at 12 000 rpm for 1 min and the supernatant was removed to a clean 1.5 mL microcentrifuge tube. Six-hundred µL of binding matrix was added, and tubes mixed by inversion and incubated at room temperature for 5 min. The tubes were then centrifuged at 12 000 rpm for 1 min and the supernatant was discarded.
Pellets were resuspended in 500 µL SEWS-M by stirring with a pipette tip then centrifuging at 13 000 rpm for 1 min. After removal of the wash solution, tubes were spun 5 s and residual solution was pipetted off before eluting DNA. Matrix was resuspended in 100 µL DES by stirring with a pipette tip followed by incubation at room temperature for 3 min. Samples were then centrifuged at 12 000 rpm for 1 min and the supernatant was removed to a 0.5 mL microcentrifuge tube.
ITS PCR
DNA was amplified with ITS1 or ITS2 region primers. ITS1 primers: UN-UP18542, 5' cgtaacaaggtttccgtaggtgaac 3'and OOM-LO5.8S47B, 5' cgcattacgtatcgcagttcgcag 3'. ITS2 primers: OOM-UP5.8S01, 5' caactttcagcagtggatgtct 3' and PY-LO28S22, 5' gtttcttttcctccgcttattaatatg 3' (Lévesque et al 1998
). Taq polymerase, 10x reaction buffer, and magnesium were obtained from Promega (Madison, Wisconsin 53711). The 25-µL reaction mixture contained 1.5 mM magnesium, 10 pmoles of each primer, 200 uM dNTPs, and 1 Unit Taq polymerase. The cycling conditions for ITS1 primers were 94 C for 2 min, 32 cycles of 94 C for 45 s, 60 C for 45 s, 72 C for 1 min, followed by 1 cycle of 72 C for 10 min. Cycling conditions were the same for the ITS2 primers with the exception of an annealing temperature of 52 C.
Sequencing of ITS PCR products Five µL of each PCR product was treated by incubating with 2 uL ExoSAP-IT (United States Biochemical, Cleveland, Ohio 44121) for 30 min at 37 C followed by 15 min at 80 C. Sequencing reactions contained 5 µL of ExoSAP-IT treated PCR product, 4 µL Big Dye Mix (ABI-Prism, Foster City, California 94404), 1 µL of 3.2 pmoles/µL primer. An MJReserch PT-200 thermocycler was used to run reactions with the following cycling parameters: 2 min at 94 C, 25 cycles of 1 min at 94 C, 1 min at 50 C, and 1 min at 60 C followed by holding at 4 C. After cycling, 10 µL of distilled water was added to each sequencing reaction. Each diluted reaction was cleaned over a Sephadex G-50 fine mini spin column, dried in a speed-vac, resuspended in 4 µL of loading dye, and 2 µL of the reaction/dye mix was run on an ABI 377 sequencer.
| TAXONOMY |
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Colonies on PDA usually with a vague radiate pattern, composed of hyphae up to 5 µm wide, producing many appressoria up to 160 µm long, 812 µm wide (Figs. 1, 2). Appressoria curved to sickle-shaped (Fig. 1), often branched (Fig. 2) or in chains, constricted at point of connection. Zoosporangia more or less globose, (Fig. 3), (11)1622(30) µm, terminal or intercalary or formed from appressoria; remains of appressorium often attached to the base of zoosporangium (Fig. 3A, D). Zoospores forming at 20 C in zoosporangia, discharging by way of exit tubes 24 µm long (Fig. 4). Appressorial and hyphal swellings globose, lemon-shaped, or cylindrical, terminal or intercalary in hyphae or appressorium (Fig. 5), (11)1322(24) µm long, (8)1018(20) µm wide, with septa often separating appressorial swellings from empty appressorium (Fig. 5A, B, D). Oogonia smooth, terminal or produced within hyphae or appressoria (Fig. 6). Antheridia sac-shaped to crook-necked (Fig. 7), 715 µm long, 49 µm wide, mostly monoclinous, occasionally hypogenous (Fig. 8A, B), 13 per oogonium. Oospores smooth, globose, usually plerotic (Fig. 8), (12)1417(27) µm diam with wall 12 µm thick, 1 or occasionally 2 per oogonium (Fig. 8C).
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Specimens examined. UNITED STATES, WASHINGTON: Pullman, Whitman Co, Lat: 46° 45' 19'' N, Long. 117° 04' 43'' W. Isolated from roots and soil of wheat Triticum aestivum in agriculture field, 16 August 2000. T. Paulitz 90089 (HOLOTYPE: DAOM 230114. ISOTYPE: CBS 110198. Living culture ex type ATCC MYA 2560); Harrington, Lincoln Co., Lat: 47° 23' 54'' N, Long. 118° 09' 37'' W. Isolated from roots and soil of wheat Triticum aestivum in agriculture field, 4 August 2000. T. Paulitz 020125. DAOM 230112, CBS 110196. ATCC MYA 2561; Dixie, Walla Walla Co. Lat: 46° 07' 35'' N, Long. 118° 03' 56'' W. Isolated from roots and soil of wheat Triticum aestivum in agriculture field, 1 August 2000. T. Paulitz 020135. DAOM 230113, CBS 110197. ATCC MYA 2562.
Etymology. Ab, Latin = away from, departing from, as in abnormal + appressorium.
| DISCUSSION |
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Oospores are mostly plerotic and antheridia are mostly monoclinous and paragynous, although some diclinous and hypogynous antheridia were seen. Not all isolates produced oospores in grass leaves, but since single hyphal-tipped cultures produced oospores, this species is homothallic.
This species was isolated as part of a comprehensive survey of wheat and barley fields in eastern Washington State. Pythium species were identified with both classical and molecular techniques, namely sequencing of the ITS region. This latter technique allows the identification of species that are difficult to distinguish from one another (e.g., P. ultimum vs P. debaryanum), species that do not form oospores, or species that have not been described. Sprague (1946)
reported nine species of Pythium from grasses and grains in the northern Great Plains and western states. These included P. aristosporum Vanterpool, P. arrhenomanes Drechs., P. ultimum, P. irregulare Buisman, P. debaryanum Auct. non R. Hesse, P. monospermum Pringsh., P. periilum Drechs., P. rostratum Butler, and P. tarticrescens Vanterpool. Most of Sprague's (1946)
references were to isolates from the northern Great Plains, but P. ultimum, P. rostratum and P. tardicrescens were specifically mentioned as having been found in the Pullman, Washington area. Chamswarng and Cook (1985)
identified ten species from both wheat roots and wheat field soils near Pullman Washington, including P. ultimum var. ultimum, P. ultimum var. sporangiiferum, P. irregulare, P. torulosum Coker & Patterson, P. volutum Vanterpool, and P. heterothallicum Campbell & Hendrix. They also described two unidentified species, Pythium sp. "E" and "D". Neither resembled P. abappressorium. Pythium sp. "E" formed much larger sporangia (30 µm x 24 µm diameter) that were often catenulate. Oospores were only formed when crossed with other isolates. Pythium sp. "D" exhibited a sharp chrysanthemum pattern in culture, and grew at one-half the growth rate of P. abappressorium at 20 C. It is unclear why P. abappressorium was not detected in the work of Chamswarng and Cook (1985)
. They isolated directly from wheat roots or used soil dilutions. In our experience, fewer species are isolated directly from wheat roots, possibly because diseased roots are rotted away and not recovered on the root washing sieves. Chamswarng and Cook (1985)
also planted wheat seeds into the soils, and isolated from the roots of the seedlings. Both methods probably favor highly virulent species of Pythium. Using grass leaves in a primary screening may favor more weakly pathogenic species. Another possibility is misidentification. If isolated strains did not produce oospores, they could have been misidentified as P. ultimum var. ultimum, which produces hyphal swellings of similar size. Pythium abappressorium appears to be widespread in eastern Washington and was found at over 50% of the locations surveyed (Paulitz unpubl). Out of 230 randomly picked isolates that were sequenced, 62 or 27% were P. abappressorium.
This species was also found independently two years earlier by Mazzola et al (2002)
, being recovered from the roots of apple in three of six orchards surveyed in central Washington State. Isolates were obtained from the CV orchard in Orondo, the DO orchard in Zillah and the GC orchard in Manson, Washington. The CV and GC orchards have been under continuous orchard management for over 60 yr, while the DO orchard was established in 1994. Prior to orchard establishment, the CV and GC orchard sites were native shrub-steppe vegetation and the DO orchard had been in long-term perennial pasture. This species typically constituted a minor component of the total Pythium population recovered from the roots of apple at these sites, but was the dominant non-pathogenic species recovered from the roots of apple at the DO and GC orchards. Some of these isolates (DAOM Numbers 229185, 229186, 229191, 229192, 229193, 229194) were sequenced by C. A. Lévesque, and matched the P. abappressorium isolates of Paulitz reported here (Lévesque, pers comm).
P. abappressorium is not pathogenic to apples, but can cause damping-off and embryo infection on wheat. In tests in pasteurized soil at 16 C, an inoculum density of 1000 cfu/g resulted in significant damping-off of spring wheat. Pythium spp. can be found in PNW soils in populations ranging from 100 to 1000 cfu/g (Cook et al 1987
). However, pasteurized soil may increase the inoculum potential of P. abappressorium, compared to natural soil. In tests in natural soil at similar inoculum densities, (Paulitz unpubl), we did not observe a significant reduction in emergence, but did observe symptoms of embryo infection, including first leaves that were smaller and twisted. In natural soil, P. ultimum and P. irregulare appeared to be more virulent than P. abappressorium. More detailed studies are ongoing to compare the virulence of P. abappressorium to other Pythium species.
In culture, P. abappressorium is fast growing, with a similar growth rate to P. ultimum. It has a broad temperature optimum, with similar growth rates over the range of 1530 C. No growth was detected at 35 C, but this fungus was capable of slower growth at 5 and 10 C. Soil temperatures in 1998 at Pullman, Washington at 5 cm under conventional tillage averaged 8.8, 12.2, 14.5, 20.2, 23.8, 8.3, and 4.2 C during April, May, June, July, August, October, and November, respectively (D. Huggins, unpubl). This indicates that P. abappressorium can be active during the early fall and spring, when winter and spring wheat are planted in the Pacific Northwest, and when root establishment would take place.
The ITS1 DNA sequences of P. abappressorium were compared with over 1200 sequences from a worldwide collection that included types and neotypes of most species of Pythium (Lévesque unpubl), using BLAST. There were no matches to any of these isolates. This is further confirmatory evidence that P. abappressorium has not been described before. P. macrosporum had the closest sequence, but it had less than 80% homology with the ITS1 region of P. abappressorium, and is quite different morphologically. In general, the ITS1 sequences of Pythium isolates within a species may vary by only 1 or 2 base pairs.
In conclusion, a new species of Pythium has been described from Washington State. This species was widely distributed in wheat and barley fields, and was pathogenic on wheat. It was also recovered from soil and apple roots from various orchard sites throughout the primary apple production region of central Washington, ranging from Manson in the north to Zillah in the south. P. abappressorium was highly competitive in the rhizosphere of apple and was able to suppress colonization by pathogenic species of Pythium, including P. sylvaticum and P. ultimum, resulting in enhanced apple growth. Thus, P. abappressorium has potential to serve as a biological agent for control of these root pathogens of apple. The interactions between P. abappressorium and other Pythium species in Washington soils remain to be studied.
| ACKNOWLEDGMENTS |
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| FOOTNOTES |
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Accepted for publication June 27, 2002.
| LITERATURE CITED |
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Chamswarng C, Cook RJ., 1985 Identification and comparative pathogenicity of Pythium species from wheat roots and wheat-field soils in the Pacific Northwest. Phytopathology 75:821-827
Cook RJ, Sitton JW, Haglund WA., 1987 Influence of soil treatments on growth and yield of wheat and implications for control of Pythium root rot. Phytopathology 77:1192-1198
Dick MW., 1990 Key to Pythium. Published by author. Reading, U.K. 64 p
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Mazzola M, Andrews PK, Reganold JP, Lévesque CA., 2002 Frequency, virulence and metalaxyl sensitivity of Pythium spp. isolated from apple roots under conventional and organic production systems. Plant Disease 86:669-675
Mircetich SM, Kraft JM., 1973 Efficiency of various selective media in determining Pythium populations in soil. Mycopathol Mycol Appl 50:151-161[Medline]
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Paulitz TC, Baker R., 1987 Biological control of Pythium damping-off of cucumbers with Pythium nunn: population dynamics and disease suppression. Phytopathology 77:335-340
Sprague R., 1946 Rootrots and leafspots of grains and grasses in the northern Great Plains and western states. Plant Dis Reptr 163:101-268
Stanghellini ME, Hancock JG., 1971 The sporangium of Pythium ultimum as a survival structure in soil. Phytopathology 61:157-161
Van der Plaats-Niterink AJ., 1981 Monograph of the genus Pythium. Studies in Mycology No. 21. Baarn, the Netherlands: Centraalbureau Voor Schimmelcultures. 242 p
Waterhouse GM., 1968 The genus Pythum Pringsheim. Diagnoses (or descriptions) and figures form the original papers. Mycol Papers. Kew: CMI 110:1-71
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