This Article Full Text Full Text (PDF) Services Similar articles in this journal Alert me to new issues of the journal Download to citation manager Permissions Citing Articles Citing Articles via HighWire Citing Articles via Google Scholar Google Scholar Articles by Blackwell, M. Articles by Spatafora, J. W. Search for Related Content PubMed Articles by Blackwell, M. Articles by Spatafora, J. W. Agricola Articles by Blackwell, M. Articles by Spatafora, J. W.

Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha)

     Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana 70803

David S. Hibbett

     Department of Biology, Clark University, Worcester, Massachusetts 01610

John W. Taylor

     Department of Plant and Microbial Biology, University of California, Berkeley, California 94720

Joseph W. Spatafora

     Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331

Research in fungal phylogenetics and systematics progressed rapidly in the past decade due to advances in DNA sequencing technologies and analytical methods. A newfound wealth of sequence data acquired through community-wide initiatives has advanced the process of acquiring a stable phylogenetic classification of many fungal taxa. Financial support from the National Science Foundation Research Coordination Networks: a phylogeny for kingdom Fungi (Deep Hypha) for 5 y enabled more than 100 fungal systematists to assess the taxon sampling, molecular markers and analytical methods necessary to facilitate such a project. Later a second NSF program provided financial support for the Assembling the Fungal Tree of Life (AFTOL) project to accomplish much of the research. Deep Hypha may be viewed as an involved parent of AFTOL with a continuing role as coordinator of likeminded workers. Many questions posed at the beginning of the Deep Hypha project have been addressed, at least in part, although some details remain to be clarified. Many of the main branches of the fungal tree are stable and well supported, often as a result of multigene analyses that involved collaboration of many laboratories. More work is necessary, however, to resolve certain branching events near the base of the tree, as well as to reconstruct relationships in some terminal groups. The phylogenetic classification in this issue of Mycologia is a product of the AFTOL project and many other independent research initiatives, and it is an initial synthesis of a working classification designed to be used for all major publications that require a phylogenetic classification of fungi.

Key words: mycological community, mycota, systematics

This article has been cited by other articles:

				J. Sethuraman, A. Majer, N. C. Friedrich, D. R. Edgell, and G. Hausner Genes within Genes: Multiple LAGLIDADG Homing Endonucleases Target the Ribosomal Protein S3 Gene Encoded within an rnl Group I Intron of Ophiostoma and Related Taxa Mol. Biol. Evol., October 1, 2009; 26(10): 2299 - 2315. [Abstract] [Full Text] [PDF]

				C. L. Schoch, G.-H. Sung, F. Lopez-Giraldez, J. P. Townsend, J. Miadlikowska, V. Hofstetter, B. Robbertse, P. B. Matheny, F. Kauff, Z. Wang, et al. The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits Syst Biol, June 4, 2009; (2009) syp020v1. [Abstract] [Full Text] [PDF]

				B. Devier, G. Aguileta, M. E. Hood, and T. Giraud Ancient Trans-specific Polymorphism at Pheromone Receptor Genes in Basidiomycetes Genetics, January 1, 2009; 181(1): 209 - 223. [Abstract] [Full Text] [PDF]

				G.J. Celio, M. Padamsee, B.T.M. Dentinger, R. Bauer, and D.J. McLaughlin Assembling the Fungal Tree of Life: constructing the Structural and Biochemical Database Mycologia, November 1, 2006; 98(6): 850 - 859. [Abstract] [Full Text] [PDF]

				J. Sugiyama, K. Hosaka, and S.-O. Suh Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas Mycologia, November 1, 2006; 98(6): 996 - 1005. [Abstract] [Full Text] [PDF]